Started by upstream project "BIOFORMATS-test-repo" build number 220
originally caused by:
Started by upstream project "Trigger" build number 247
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9730648207998076002.sh
+ '[' imspector = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34982_merge_ci -v /uod/idr/repos/curated/imspector:/data -v /uod/idr-scratch/merge-ci/curated/imspector:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:02:40,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:02:40,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:02:40,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:02:40,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:02:40,677 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:02:40,678 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:02:40,678 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:02:40,679 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:02:40,679 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
[testng] 05:02:40,680 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
[testng] 05:02:40,680 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 494 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-14 05:02:40,693] [main] java.version = 1.8.0_342
[testng] 05:02:40,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:02:40,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:40,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_05-02-40.log]
[testng] 05:02:40,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-14 05:02:40,780] [main] testng.directory = /data
[testng] [2024-10-14 05:02:40,780] [main] testng.configDirectory = /config
[testng] [2024-10-14 05:02:40,909] [main] testng.multiplier = 1.0
[testng] [2024-10-14 05:02:40,909] [main] testng.in-memory = false
[testng] [2024-10-14 05:02:40,909] [main] testng.allow-missing = false
[testng] [2024-10-14 05:02:40,909] [main] user.language = fr
[testng] [2024-10-14 05:02:40,909] [main] user.country = FR
[testng] [2024-10-14 05:02:40,909] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-14 05:02:57,920] [main] ----------------------------------------
[testng] [2024-10-14 05:02:57,920] [main] Total files: 29
[testng] [2024-10-14 05:02:57,921] [main] Scan time: 17.011 s (586 ms/file)
[testng] [2024-10-14 05:02:57,921] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-14 05:03:22,254] [pool-1-thread-1] Initializing /data/qa-7992/ArrayIndexOutOfBoundsException.msr:
[testng] 05:03:22,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:03:22,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:22,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_05-03-22.log]
[testng] 05:03:22,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33d9af79 - End of configuration.
[testng] [2024-10-14 05:03:22,824] [pool-1-thread-12] Initializing /data/qa-27309/181109_e3_cut.msr:
[testng] 05:03:22,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:03:22,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:22,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_05-03-22.log]
[testng] 05:03:22,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d5cf032 - End of configuration.
[testng] [2024-10-14 05:03:23,412] [pool-1-thread-11] Initializing /data/qa-7992/NegativeArraySizeException_small.msr:
[testng] 05:03:23,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:03:23,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:23,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_05-03-23.log]
[testng] 05:03:23,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e741401 - End of configuration.
[testng] [2024-10-14 05:03:24,029] [pool-1-thread-10] Initializing /data/qa-7992/IllegalArgumentException.msr:
[testng] 05:03:24,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:03:24,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:24,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_05-03-24.log]
[testng] 05:03:24,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27af67ec - End of configuration.
[testng] [2024-10-14 05:03:24,609] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Lifetime file.msr:
[testng] 05:03:24,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:03:24,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:24,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_05-03-24.log]
[testng] 05:03:24,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37c93bc8 - End of configuration.
[testng] [2024-10-14 05:03:25,230] [pool-1-thread-8] Initializing /data/qa-9468/HPDR10467U-40-VD0191-red-100pc-without-tube.msr:
[testng] 05:03:25,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:03:25,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:25,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_05-03-25.log]
[testng] 05:03:25,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ead0d30 - End of configuration.
[testng] [2024-10-14 05:03:25,875] [pool-1-thread-7] Initializing /data/qa-11369/01 - 770nm FITC - HybridPMT.msr:
[testng] 05:03:25,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:03:25,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:25,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_05-03-25.log]
[testng] 05:03:25,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153895cc - End of configuration.
[testng] [2024-10-14 05:03:26,296] [pool-1-thread-6] Initializing /data/qa-7936/02 - not working.msr:
[testng] 05:03:26,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:03:26,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:26,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_05-03-26.log]
[testng] 05:03:26,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d51427 - End of configuration.
[testng] [2024-10-14 05:03:26,826] [pool-1-thread-5] Initializing /data/qa-4929/OMERO data/01 - 27hpf_f2-GFP-wt1b+rfp-flk1 - 3channel-z-stack.msr:
[testng] 05:03:26,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:03:26,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:26,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_05-03-26.log]
[testng] 05:03:26,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6577f752 - End of configuration.
[testng] [2024-10-14 05:03:27,388] [pool-1-thread-4] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_FLIM_z-stack_1.msr:
[testng] 05:03:27,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:03:27,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:27,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_05-03-27.log]
[testng] 05:03:27,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d436cd - End of configuration.
[testng] [2024-10-14 05:03:27,946] [pool-1-thread-3] Initializing /data/qa-11369/02 - 70 - 1 - tp1 - x16 TCSPC.msr:
[testng] 05:03:27,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:03:27,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:27,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_05-03-27.log]
[testng] 05:03:27,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5d9ae7 - End of configuration.
[testng] [2024-10-14 05:03:28,491] [pool-1-thread-2] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning.msr:
[testng] 05:03:28,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:03:28,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:03:28,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_05-03-28.log]
[testng] 05:03:28,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6441ed2b - End of configuration.
[testng] [2024-10-14 05:03:35,347] [pool-1-thread-12] Initializing /data/qa-7668/01 - RhodamineB - FLIM test - 4 binning_12-08-53_TCSPC_C0.ome.tif:
[testng] [2024-10-14 05:03:36,493] [pool-1-thread-9] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - 500x500x105_1046x1046x57_1.875um_steps.msr:
[testng] [2024-10-14 05:03:37,161] [pool-1-thread-4] Initializing /data/qa-7658/Document1_13-09-25.msr:
[testng] [2024-10-14 05:03:37,751] [pool-1-thread-11] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel single slice 4 tiles.msr:
[testng] [2024-10-14 05:03:38,386] [pool-1-thread-3] Initializing /data/qa-7936/z-TC - for LOCI.msr:
[testng] [2024-10-14 05:03:38,946] [pool-1-thread-6] Initializing /data/qa-4929/OMERO data/01 - urea_irf_image_TCSPC-data.msr:
[testng] [2024-10-14 05:03:39,352] [pool-1-thread-7] Initializing /data/paul/msr files - Paul Thomas UEA/Single channel Zstack.msr:
[testng] [2024-10-14 05:03:39,889] [pool-1-thread-1] Initializing /data/qa-17102/1 channel binning 4 time series.msr:
[testng] [2024-10-14 05:03:40,532] [pool-1-thread-10] Initializing /data/qa-17102/2 channels FLIM z stack.msr:
[testng] [2024-10-14 05:03:41,103] [pool-1-thread-5] Initializing /data/qa-17102/2 channels FLIM time series.msr:
[testng] [2024-10-14 05:03:41,584] [pool-1-thread-8] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - Arf_z-stack_FLIM_TDC_C0.ome.tif:
[testng] [2024-10-14 05:03:42,758] [pool-1-thread-2] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel Zstack.msr:
[testng] [2024-10-14 05:03:48,470] [pool-1-thread-5] Initializing /data/qa-7702/trim- scope msr z-stacks/02 - 500x500x105_1046x1046x57_1.875um_steps/02 - 500x500x105_1046x1046x57_1_875um_steps_11-34-02_PMT - PMT [PMT1] _C0.ome.tif:
[testng] [2024-10-14 05:03:51,494] [pool-1-thread-10] Initializing /data/qa-7936/01 - working.msr:
[testng] [2024-10-14 05:03:52,260] [pool-1-thread-1] Initializing /data/qa-17102/1 channel binning 8 time series.msr:
[testng] [2024-10-14 05:03:52,871] [pool-1-thread-9] Initializing /data/paul/msr files - Paul Thomas UEA/Two channel single slice.msr:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 42 seconds
Finished: SUCCESS