Started by upstream project "BIOFORMATS-test-repo" build number 220 originally caused by: Started by upstream project "Trigger" build number 247 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9193762850964135990.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_35016_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:45:20,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:45:20,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:45:20,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:45:20,668 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:45:20,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:45:20,669 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:45:20,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:45:20,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:45:20,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:45:20,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:45:20,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:45:20,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:45:20,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:45:20,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:45:20,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:45:20,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:45:20,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:45:20,928 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:45:20,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:45:20,929 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:45:20,929 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:45:20,930 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:45:20,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-14 06:45:20,939] [main] java.version = 1.8.0_342 [testng] 06:45:20,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:45:20,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:45:20,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_06-45-20.log] [testng] 06:45:20,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-14 06:45:20,990] [main] testng.directory = /data [testng] [2024-10-14 06:45:20,991] [main] testng.configDirectory = /config [testng] [2024-10-14 06:45:21,002] [main] testng.multiplier = 1.0 [testng] [2024-10-14 06:45:21,003] [main] testng.in-memory = false [testng] [2024-10-14 06:45:21,003] [main] testng.allow-missing = false [testng] [2024-10-14 06:45:21,003] [main] user.language = fr [testng] [2024-10-14 06:45:21,003] [main] user.country = FR [testng] [2024-10-14 06:45:21,003] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-14 06:46:09,519] [main] ---------------------------------------- [testng] [2024-10-14 06:46:09,519] [main] Total files: 31 [testng] [2024-10-14 06:46:09,519] [main] Scan time: 48.516 s (1565 ms/file) [testng] [2024-10-14 06:46:09,519] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-14 06:47:10,929] [pool-1-thread-1] Initializing /data/david/000000_000001.jpx: [testng] 06:47:10,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:47:10,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:10,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_06-47-10.log] [testng] 06:47:10,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e681c76 - End of configuration. [testng] [2024-10-14 06:47:12,088] [pool-1-thread-12] Initializing /data/david/C1R1_FOS.jp2: [testng] 06:47:12,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:47:12,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:12,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_06-47-12.log] [testng] 06:47:12,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649354ab - End of configuration. [testng] [2024-10-14 06:47:13,234] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 06:47:13,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:47:13,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:13,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_06-47-13.log] [testng] 06:47:13,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486f444e - End of configuration. [testng] [2024-10-14 06:47:14,530] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] 06:47:14,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:47:14,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:14,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_06-47-14.log] [testng] 06:47:14,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55073338 - End of configuration. [testng] [2024-10-14 06:47:15,711] [pool-1-thread-9] Initializing /data/kraig/head.jp2: [testng] 06:47:15,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:47:15,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:15,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_06-47-15.log] [testng] 06:47:15,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ea3c133 - End of configuration. [testng] [2024-10-14 06:47:16,915] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] 06:47:16,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:47:16,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:16,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_06-47-16.log] [testng] 06:47:16,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65efb33e - End of configuration. [testng] [2024-10-14 06:47:18,168] [pool-1-thread-7] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 06:47:18,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:47:18,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:18,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_06-47-18.log] [testng] 06:47:18,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13ae9029 - End of configuration. [testng] [2024-10-14 06:47:19,435] [pool-1-thread-6] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 06:47:19,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:47:19,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:19,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_06-47-19.log] [testng] 06:47:19,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@430c8e3f - End of configuration. [testng] [2024-10-14 06:47:20,905] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] 06:47:20,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:47:20,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:20,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_06-47-20.log] [testng] 06:47:20,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d9ee5a - End of configuration. [testng] [2024-10-14 06:47:22,467] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 06:47:22,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:47:22,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:22,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_06-47-22.log] [testng] 06:47:22,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f8fa1cf - End of configuration. [testng] [2024-10-14 06:47:23,755] [pool-1-thread-3] Initializing /data/vikram/Captured 1.jp2: [testng] 06:47:23,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:47:23,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:23,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_06-47-23.log] [testng] 06:47:23,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ab5cbf5 - End of configuration. [testng] [2024-10-14 06:47:25,105] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jpc: [testng] 06:47:25,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:47:25,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:47:25,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_06-47-25.log] [testng] 06:47:25,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31968422 - End of configuration. [testng] [2024-10-14 06:47:36,737] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-10-14 06:47:38,080] [pool-1-thread-3] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-10-14 06:47:39,217] [pool-1-thread-5] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-10-14 06:47:39,569] [pool-1-thread-8] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-10-14 06:47:41,078] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] [2024-10-14 06:47:42,534] [pool-1-thread-4] Initializing /data/frans/flower.jp2: [testng] [2024-10-14 06:47:43,718] [pool-1-thread-1] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-10-14 06:47:50,447] [pool-1-thread-10] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-10-14 06:47:54,704] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-10-14 06:47:56,569] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-10-14 06:47:59,721] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-10-14 06:48:05,619] [pool-1-thread-2] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-10-14 06:48:07,191] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-10-14 06:48:17,411] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-10-14 06:48:19,384] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-10-14 06:48:23,088] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-10-14 06:48:27,276] [pool-1-thread-11] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-10-14 06:48:29,082] [pool-1-thread-7] Initializing /data/vikram/Captured 3.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 18 seconds Finished: SUCCESS