Started by upstream project "BIOFORMATS-test-repo" build number 220 originally caused by: Started by upstream project "Trigger" build number 247 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3360267101537322181.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_35018_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:54:46,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:54:46,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:54:46,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:54:46,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:54:46,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:54:46,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:54:46,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:54:46,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:54:46,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:54:46,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:54:46,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:54:46,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:54:46,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:54:46,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:54:46,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:54:46,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:54:46,298 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:54:46,298 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:54:46,298 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:54:46,299 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:54:46,299 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:54:46,300 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:54:46,300 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-14 06:54:46,309] [main] java.version = 1.8.0_342 [testng] 06:54:46,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:54:46,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:54:46,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_06-54-46.log] [testng] 06:54:46,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-14 06:54:46,359] [main] testng.directory = /data [testng] [2024-10-14 06:54:46,359] [main] testng.configDirectory = /config [testng] [2024-10-14 06:54:46,371] [main] testng.multiplier = 1.0 [testng] [2024-10-14 06:54:46,371] [main] testng.in-memory = false [testng] [2024-10-14 06:54:46,371] [main] testng.allow-missing = false [testng] [2024-10-14 06:54:46,371] [main] user.language = fr [testng] [2024-10-14 06:54:46,371] [main] user.country = FR [testng] [2024-10-14 06:54:46,371] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-14 06:54:57,848] [main] ---------------------------------------- [testng] [2024-10-14 06:54:57,848] [main] Total files: 22 [testng] [2024-10-14 06:54:57,848] [main] Scan time: 11.477 s (521 ms/file) [testng] [2024-10-14 06:54:57,848] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-14 06:55:35,398] [pool-1-thread-1] Initializing /data/converted/clown8c.ipw: [testng] 06:55:35,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:55:35,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:35,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_06-55-35.log] [testng] 06:55:35,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e2f7bcb - End of configuration. [testng] [2024-10-14 06:55:36,327] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 06:55:36,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:55:36,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:36,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_06-55-36.log] [testng] 06:55:36,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57c446cf - End of configuration. [testng] [2024-10-14 06:55:37,298] [pool-1-thread-11] Initializing /data/converted/mitosis-test.seq: [testng] 06:55:37,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:55:37,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:37,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_06-55-37.log] [testng] 06:55:37,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fb6489c - End of configuration. [testng] [2024-10-14 06:55:38,324] [pool-1-thread-10] Initializing /data/converted/clown.ipw: [testng] 06:55:38,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:55:38,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:38,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_06-55-38.log] [testng] 06:55:38,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e9a859 - End of configuration. [testng] [2024-10-14 06:55:39,308] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 06:55:39,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:55:39,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:39,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_06-55-39.log] [testng] 06:55:39,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60805f0a - End of configuration. [testng] [2024-10-14 06:55:40,359] [pool-1-thread-8] Initializing /data/samples/HEART.SEQ: [testng] 06:55:40,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:55:40,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:40,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_06-55-40.log] [testng] 06:55:40,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac8d95c - End of configuration. [testng] [2024-10-14 06:55:41,339] [pool-1-thread-7] Initializing /data/converted/clown8c.tif: [testng] 06:55:41,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:55:41,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:41,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_06-55-41.log] [testng] 06:55:41,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21053a6f - End of configuration. [testng] [2024-10-14 06:55:43,723] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips: [testng] 06:55:43,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:55:43,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:43,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_06-55-43.log] [testng] 06:55:43,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba201e5 - End of configuration. [testng] [2024-10-14 06:55:44,709] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] 06:55:44,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:55:44,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:44,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_06-55-44.log] [testng] 06:55:44,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585393a0 - End of configuration. [testng] [2024-10-14 06:55:48,371] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 06:55:48,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:55:48,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:48,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_06-55-48.log] [testng] 06:55:48,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@111974d4 - End of configuration. [testng] [2024-10-14 06:55:49,415] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq: [testng] 06:55:49,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:55:49,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:49,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_06-55-49.log] [testng] 06:55:49,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@313ae928 - End of configuration. [testng] [2024-10-14 06:55:50,527] [pool-1-thread-2] Initializing /data/converted/dub01.pic: [testng] 06:55:50,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:55:50,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:50,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_06-55-50.log] [testng] 06:55:50,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd6522 - End of configuration. [testng] [2024-10-14 06:56:02,007] [pool-1-thread-10] Initializing /data/converted/dub01.ipw: [testng] [2024-10-14 06:56:03,001] [pool-1-thread-9] Initializing /data/converted/mitosis-test.tif: [testng] [2024-10-14 06:56:07,188] [pool-1-thread-1] Initializing /data/converted/clown.seq: [testng] [2024-10-14 06:56:08,221] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-10-14 06:56:10,633] [pool-1-thread-4] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-10-14 06:56:13,115] [pool-1-thread-11] Initializing /data/converted/dub01.seq: [testng] [2024-10-14 06:56:14,168] [pool-1-thread-8] Initializing /data/converted/clown8c.seq: [testng] [2024-10-14 06:56:15,217] [pool-1-thread-12] Initializing /data/samples/PROBE.TIF: [testng] [2024-10-14 06:56:17,111] [pool-1-thread-3] Initializing /data/converted/mitosis-test.ipw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 38 seconds Finished: SUCCESS