Started by upstream project "BIOFORMATS-test-repo" build number 221
originally caused by:
Started by upstream project "Trigger" build number 248
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9094058526123562594.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35040_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:35:51,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:35:51,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:35:51,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:51,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:51,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:35:51,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:35:51,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:35:51,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:51,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:51,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:35:51,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:35:51,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:35:51,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:35:51,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:35:51,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:35:51,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:35:51,741 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:35:51,742 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:35:51,742 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:35:51,742 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:35:51,742 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:35:51,743 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:35:51,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-15 01:35:51,751] [main] java.version = 11.0.16
[testng] 01:35:51,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:35:51,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:51,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_01-35-51.log]
[testng] 01:35:51,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-15 01:35:51,798] [main] testng.directory = /data
[testng] [2024-10-15 01:35:51,798] [main] testng.configDirectory = /config
[testng] [2024-10-15 01:35:51,807] [main] testng.multiplier = 1.0
[testng] [2024-10-15 01:35:51,808] [main] testng.in-memory = false
[testng] [2024-10-15 01:35:51,808] [main] testng.allow-missing = false
[testng] [2024-10-15 01:35:51,809] [main] user.language = en
[testng] [2024-10-15 01:35:51,809] [main] user.country = ${user.country}
[testng] [2024-10-15 01:35:51,809] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-15 01:36:43,880] [main] ----------------------------------------
[testng] [2024-10-15 01:36:43,880] [main] Total files: 21
[testng] [2024-10-15 01:36:43,881] [main] Scan time: 52.071 s (2479 ms/file)
[testng] [2024-10-15 01:36:43,881] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-15 01:37:44,233] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt:
[testng] 01:37:44,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:37:44,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:44,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_01-37-44.log]
[testng] 01:37:44,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd88844 - End of configuration.
[testng] [2024-10-15 01:37:46,488] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 01:37:46,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:37:46,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:46,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_01-37-46.log]
[testng] 01:37:46,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfe3aec - End of configuration.
[testng] [2024-10-15 01:37:50,137] [pool-1-thread-11] Initializing /data/stefan/001_q06.txt:
[testng] 01:37:50,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:37:50,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:50,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_01-37-50.log]
[testng] 01:37:50,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47706b - End of configuration.
[testng] [2024-10-15 01:37:55,877] [pool-1-thread-10] Initializing /data/stefan/001_q10.txt:
[testng] 01:37:55,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:37:55,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:55,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-15_01-37-55.log]
[testng] 01:37:55,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78208787 - End of configuration.
[testng] [2024-10-15 01:38:06,719] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt:
[testng] 01:38:06,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:38:06,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:06,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-15_01-38-06.log]
[testng] 01:38:06,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1487727e - End of configuration.
[testng] [2024-10-15 01:38:10,778] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt:
[testng] 01:38:10,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:38:10,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:10,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_01-38-10.log]
[testng] 01:38:10,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3346bbd4 - End of configuration.
[testng] [2024-10-15 01:38:14,079] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt:
[testng] 01:38:14,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:38:14,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:14,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_01-38-14.log]
[testng] 01:38:14,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e893b51 - End of configuration.
[testng] [2024-10-15 01:38:16,435] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt:
[testng] 01:38:16,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:38:16,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:16,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_01-38-16.log]
[testng] 01:38:16,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79c94a75 - End of configuration.
[testng] [2024-10-15 01:38:22,159] [pool-1-thread-5] Initializing /data/stefan/001_q03.txt:
[testng] 01:38:22,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:38:22,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:22,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_01-38-22.log]
[testng] 01:38:22,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53902135 - End of configuration.
[testng] [2024-10-15 01:38:24,372] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt:
[testng] 01:38:24,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:38:24,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:24,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-15_01-38-24.log]
[testng] 01:38:24,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2118b06e - End of configuration.
[testng] [2024-10-15 01:38:34,517] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt:
[testng] 01:38:34,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:38:34,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:34,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_01-38-34.log]
[testng] 01:38:34,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ae22a2 - End of configuration.
[testng] [2024-10-15 01:38:42,906] [pool-1-thread-2] Initializing /data/stefan/001_q09.txt:
[testng] 01:38:42,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:38:42,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:42,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-15_01-38-42.log]
[testng] 01:38:42,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@feb82a - End of configuration.
[testng] [2024-10-15 01:39:50,737] [pool-1-thread-5] Initializing /data/stefan/001_q17.txt:
[testng] [2024-10-15 01:39:55,747] [pool-1-thread-7] Initializing /data/stefan/001_q13.txt:
[testng] [2024-10-15 01:40:00,783] [pool-1-thread-1] Initializing /data/stefan/001_q18.txt:
[testng] [2024-10-15 01:40:05,487] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] [2024-10-15 01:40:09,824] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt:
[testng] [2024-10-15 01:40:17,357] [pool-1-thread-12] Initializing /data/stefan/001_q15.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 31 seconds
Finished: SUCCESS