Started by upstream project "BIOFORMATS-test-repo" build number 221
originally caused by:
Started by upstream project "Trigger" build number 248
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2949216772939198697.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35062_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:13:36,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:13:36,059 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 02:13:36,059 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:36,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:36,061 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:13:36,062 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:13:36,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:13:36,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:36,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:36,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:13:36,064 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:13:36,064 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:13:36,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:13:36,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:13:36,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:13:36,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:13:36,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:13:36,270 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:13:36,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:13:36,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:13:36,270 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 02:13:36,271 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 02:13:36,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-15 02:13:36,280] [main] java.version = 11.0.16
[testng] 02:13:36,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:13:36,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:36,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_02-13-36.log]
[testng] 02:13:36,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-15 02:13:36,330] [main] testng.directory = /data
[testng] [2024-10-15 02:13:36,330] [main] testng.configDirectory = /config
[testng] [2024-10-15 02:13:36,339] [main] testng.multiplier = 1.0
[testng] [2024-10-15 02:13:36,341] [main] testng.in-memory = false
[testng] [2024-10-15 02:13:36,341] [main] testng.allow-missing = false
[testng] [2024-10-15 02:13:36,341] [main] user.language = en
[testng] [2024-10-15 02:13:36,341] [main] user.country = ${user.country}
[testng] [2024-10-15 02:13:36,341] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-15 02:13:39,639] [main] ----------------------------------------
[testng] [2024-10-15 02:13:39,639] [main] Total files: 21
[testng] [2024-10-15 02:13:39,639] [main] Scan time: 3.298 s (157 ms/file)
[testng] [2024-10-15 02:13:39,639] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-15 02:14:01,492] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA:
[testng] 02:14:01,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:14:01,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:01,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_02-14-01.log]
[testng] 02:14:01,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ae1ed54 - End of configuration.
[testng] [2024-10-15 02:14:02,060] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA:
[testng] 02:14:02,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:14:02,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:02,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_02-14-02.log]
[testng] 02:14:02,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd8b34 - End of configuration.
[testng] [2024-10-15 02:14:02,899] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] 02:14:02,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:14:02,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:02,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_02-14-02.log]
[testng] 02:14:02,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ca8e70 - End of configuration.
[testng] [2024-10-15 02:14:04,075] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA:
[testng] 02:14:04,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:14:04,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:04,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-15_02-14-04.log]
[testng] 02:14:04,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b74ca4e - End of configuration.
[testng] [2024-10-15 02:14:04,772] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA:
[testng] 02:14:04,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:14:04,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:04,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-15_02-14-04.log]
[testng] 02:14:04,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42db60c3 - End of configuration.
[testng] [2024-10-15 02:14:05,644] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA:
[testng] 02:14:05,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:14:05,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:05,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_02-14-05.log]
[testng] 02:14:05,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fbf597 - End of configuration.
[testng] [2024-10-15 02:14:06,468] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA:
[testng] 02:14:06,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:14:06,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:06,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_02-14-06.log]
[testng] 02:14:06,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33081290 - End of configuration.
[testng] [2024-10-15 02:14:07,194] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 02:14:07,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:14:07,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:07,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_02-14-07.log]
[testng] 02:14:07,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dcbb3c9 - End of configuration.
[testng] [2024-10-15 02:14:08,001] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA:
[testng] 02:14:08,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:14:08,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:08,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_02-14-08.log]
[testng] 02:14:08,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2efe4e30 - End of configuration.
[testng] [2024-10-15 02:14:08,984] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA:
[testng] 02:14:08,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:14:08,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:08,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-15_02-14-08.log]
[testng] 02:14:08,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7268a47f - End of configuration.
[testng] [2024-10-15 02:14:09,716] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA:
[testng] 02:14:09,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:14:09,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:09,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_02-14-09.log]
[testng] 02:14:09,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f181b4 - End of configuration.
[testng] [2024-10-15 02:14:10,972] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA:
[testng] 02:14:10,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:14:10,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:14:10,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-15_02-14-10.log]
[testng] 02:14:10,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f590b5 - End of configuration.
[testng] [2024-10-15 02:14:19,729] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA:
[testng] [2024-10-15 02:14:20,776] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-10-15 02:14:21,724] [pool-1-thread-3] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-10-15 02:14:22,541] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA:
[testng] [2024-10-15 02:14:23,526] [pool-1-thread-12] Initializing /data/samples/CBW8.TGA:
[testng] [2024-10-15 02:14:24,021] [pool-1-thread-6] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-10-15 02:14:25,087] [pool-1-thread-9] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-10-15 02:14:25,874] [pool-1-thread-5] Initializing /data/samples/UTC24.TGA:
[testng] [2024-10-15 02:14:27,010] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 1 second
Finished: SUCCESS