Started by upstream project "BIOFORMATS-test-repo" build number 221
originally caused by:
Started by upstream project "Trigger" build number 248
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins13436313985709219915.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35123_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 06:51:29,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:51:29,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 06:51:29,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:51:29,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:51:29,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:51:29,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:51:29,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:51:29,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:51:29,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:51:29,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:51:29,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:51:29,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:51:29,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:51:29,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:51:29,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:51:29,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:51:29,763 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:51:29,763 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:51:29,763 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:51:29,763 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:51:29,763 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 06:51:29,764 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 06:51:29,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-15 06:51:29,774] [main] java.version = 11.0.16
[testng] 06:51:29,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:51:29,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:51:29,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-15_06-51-29.log]
[testng] 06:51:29,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-15 06:51:29,822] [main] testng.directory = /data
[testng] [2024-10-15 06:51:29,823] [main] testng.configDirectory = /config
[testng] [2024-10-15 06:51:29,833] [main] testng.multiplier = 1.0
[testng] [2024-10-15 06:51:29,834] [main] testng.in-memory = false
[testng] [2024-10-15 06:51:29,834] [main] testng.allow-missing = false
[testng] [2024-10-15 06:51:29,834] [main] user.language = en
[testng] [2024-10-15 06:51:29,834] [main] user.country = ${user.country}
[testng] [2024-10-15 06:51:29,834] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-15 06:51:33,287] [main] ----------------------------------------
[testng] [2024-10-15 06:51:33,287] [main] Total files: 14
[testng] [2024-10-15 06:51:33,287] [main] Scan time: 3.453 s (246 ms/file)
[testng] [2024-10-15 06:51:33,287] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-15 06:52:00,408] [pool-1-thread-1] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 06:52:00,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:52:00,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:00,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-15_06-52-00.log]
[testng] 06:52:00,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a4fd6e6 - End of configuration.
[testng] [2024-10-15 06:52:01,990] [pool-1-thread-12] Initializing /data/timg/eric-three-projection.tif:
[testng] 06:52:01,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:52:01,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:01,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-15_06-52-01.log]
[testng] 06:52:01,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49bdaa01 - End of configuration.
[testng] [2024-10-15 06:52:03,347] [pool-1-thread-11] Initializing /data/timg/eric-one-3d.tif:
[testng] 06:52:03,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:52:03,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:03,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-15_06-52-03.log]
[testng] 06:52:03,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6599a867 - End of configuration.
[testng] [2024-10-15 06:52:04,752] [pool-1-thread-10] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 06:52:04,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:52:04,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:04,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-15_06-52-04.log]
[testng] 06:52:04,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653124b - End of configuration.
[testng] [2024-10-15 06:52:06,258] [pool-1-thread-9] Initializing /data/timg/LiveTwo.tif:
[testng] 06:52:06,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:52:06,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:06,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-15_06-52-06.log]
[testng] 06:52:06,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d631b8c - End of configuration.
[testng] [2024-10-15 06:52:07,675] [pool-1-thread-8] Initializing /data/aaron/olympus_fv500.tif:
[testng] 06:52:07,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:52:07,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:07,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-15_06-52-07.log]
[testng] 06:52:07,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d3a9f08 - End of configuration.
[testng] [2024-10-15 06:52:09,350] [pool-1-thread-7] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 06:52:09,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:52:09,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:09,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-15_06-52-09.log]
[testng] 06:52:09,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b03d555 - End of configuration.
[testng] [2024-10-15 06:52:11,256] [pool-1-thread-6] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 06:52:11,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:52:11,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:11,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-15_06-52-11.log]
[testng] 06:52:11,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72871f54 - End of configuration.
[testng] [2024-10-15 06:52:12,743] [pool-1-thread-5] Initializing /data/timg/LiveOne.tif:
[testng] 06:52:12,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:52:12,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:12,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-15_06-52-12.log]
[testng] 06:52:12,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62659b24 - End of configuration.
[testng] [2024-10-15 06:52:14,316] [pool-1-thread-4] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 06:52:14,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:52:14,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:14,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-15_06-52-14.log]
[testng] 06:52:14,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1076c6 - End of configuration.
[testng] [2024-10-15 06:52:15,847] [pool-1-thread-3] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 06:52:15,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:52:15,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:15,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-15_06-52-15.log]
[testng] 06:52:15,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dd93b25 - End of configuration.
[testng] [2024-10-15 06:52:18,106] [pool-1-thread-2] Initializing /data/timg/eric-three.tif:
[testng] 06:52:18,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:52:18,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:52:18,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-15_06-52-18.log]
[testng] 06:52:18,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e4576c0 - End of configuration.
[testng] [2024-10-15 06:52:29,472] [pool-1-thread-5] Initializing /data/timg/eric-one.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 12 seconds
Finished: SUCCESS