Started by upstream project "BIOFORMATS-test-repo" build number 222
originally caused by:
Started by upstream project "Trigger" build number 249
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7786377287671838801.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35203_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:26:21,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:26:21,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:26:21,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:26:21,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:26:21,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:26:21,825 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:26:21,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:26:21,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:26:21,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:26:21,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:26:21,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:26:21,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:26:21,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:26:21,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:26:22,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:26:22,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:26:22,006 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:26:22,006 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:26:22,006 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:26:22,006 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:26:22,006 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:26:22,007 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:26:22,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-16 01:26:22,015] [main] java.version = 17.0.2
[testng] 01:26:22,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:26:22,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:22,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_01-26-22.log]
[testng] 01:26:22,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-16 01:26:22,060] [main] testng.directory = /data
[testng] [2024-10-16 01:26:22,060] [main] testng.configDirectory = /config
[testng] [2024-10-16 01:26:22,068] [main] testng.multiplier = 1.0
[testng] [2024-10-16 01:26:22,069] [main] testng.in-memory = false
[testng] [2024-10-16 01:26:22,069] [main] testng.allow-missing = false
[testng] [2024-10-16 01:26:22,069] [main] user.language = en
[testng] [2024-10-16 01:26:22,069] [main] user.country = ${user.country}
[testng] [2024-10-16 01:26:22,069] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-16 01:26:22,536] [main] ----------------------------------------
[testng] [2024-10-16 01:26:22,536] [main] Total files: 21
[testng] [2024-10-16 01:26:22,536] [main] Scan time: 0.466 s (22 ms/file)
[testng] [2024-10-16 01:26:22,536] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-16 01:26:52,077] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim:
[testng] 01:26:52,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:26:52,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:52,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_01-26-52.log]
[testng] 01:26:52,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ba3538 - End of configuration.
[testng] [2024-10-16 01:26:52,769] [pool-1-thread-12] Initializing /data/venu/Kontrolle0003.lim:
[testng] 01:26:52,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:26:52,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:52,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_01-26-52.log]
[testng] 01:26:52,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@786a9ef0 - End of configuration.
[testng] [2024-10-16 01:26:53,666] [pool-1-thread-11] Initializing /data/venu/Kontrolle0005.lim:
[testng] 01:26:53,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:26:53,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:53,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_01-26-53.log]
[testng] 01:26:53,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5014699 - End of configuration.
[testng] [2024-10-16 01:26:54,300] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim:
[testng] 01:26:54,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:26:54,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:54,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_01-26-54.log]
[testng] 01:26:54,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0ab901 - End of configuration.
[testng] [2024-10-16 01:26:54,934] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim:
[testng] 01:26:54,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:26:54,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:54,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_01-26-54.log]
[testng] 01:26:54,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5a1c71 - End of configuration.
[testng] [2024-10-16 01:26:55,590] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim:
[testng] 01:26:55,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:26:55,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:55,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_01-26-55.log]
[testng] 01:26:55,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13830127 - End of configuration.
[testng] [2024-10-16 01:26:56,225] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim:
[testng] 01:26:56,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:26:56,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:56,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_01-26-56.log]
[testng] 01:26:56,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8d263e - End of configuration.
[testng] [2024-10-16 01:26:56,845] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim:
[testng] 01:26:56,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:26:56,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:56,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_01-26-56.log]
[testng] 01:26:56,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66123dd0 - End of configuration.
[testng] [2024-10-16 01:26:57,476] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim:
[testng] 01:26:57,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:26:57,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:57,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_01-26-57.log]
[testng] 01:26:57,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f51bdec - End of configuration.
[testng] [2024-10-16 01:26:58,207] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim:
[testng] 01:26:58,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:26:58,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:58,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_01-26-58.log]
[testng] 01:26:58,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b62e28d - End of configuration.
[testng] [2024-10-16 01:26:59,429] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim:
[testng] 01:26:59,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:26:59,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:59,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_01-26-59.log]
[testng] 01:26:59,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@284f671b - End of configuration.
[testng] [2024-10-16 01:27:00,365] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim:
[testng] 01:27:00,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:27:00,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:00,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_01-27-00.log]
[testng] 01:27:00,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@426c2e4e - End of configuration.
[testng] [2024-10-16 01:27:11,655] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim:
[testng] [2024-10-16 01:27:12,340] [pool-1-thread-12] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-10-16 01:27:13,060] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim:
[testng] [2024-10-16 01:27:13,679] [pool-1-thread-1] Initializing /data/venu/Kontrolle0013.lim:
[testng] [2024-10-16 01:27:14,316] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim:
[testng] [2024-10-16 01:27:15,010] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim:
[testng] [2024-10-16 01:27:15,633] [pool-1-thread-3] Initializing /data/venu/Kontrolle0002.lim:
[testng] [2024-10-16 01:27:16,288] [pool-1-thread-11] Initializing /data/venu/Kontrolle0018.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 10 seconds
Finished: SUCCESS