Started by upstream project "BIOFORMATS-test-repo" build number 222
originally caused by:
 Started by upstream project "Trigger" build number 249
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3176595122356414676.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35255_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 06:39:34,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:39:34,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 06:39:34,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:39:34,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:39:34,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:39:34,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:39:34,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:39:34,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:39:34,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:39:34,825 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:39:34,825 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:39:34,825 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:39:34,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:39:34,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:39:35,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:39:35,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:39:35,009 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:39:35,009 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:39:35,009 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:39:35,010 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:39:35,010 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 06:39:35,011 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 06:39:35,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-16 06:39:35,020] [main] java.version = 17.0.2
   [testng] 06:39:35,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:39:35,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:39:35,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_06-39-35.log]
   [testng] 06:39:35,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-16 06:39:35,066] [main] testng.directory = /data
   [testng] [2024-10-16 06:39:35,066] [main] testng.configDirectory = /config
   [testng] [2024-10-16 06:39:35,075] [main] testng.multiplier = 1.0
   [testng] [2024-10-16 06:39:35,075] [main] testng.in-memory = false
   [testng] [2024-10-16 06:39:35,075] [main] testng.allow-missing = false
   [testng] [2024-10-16 06:39:35,075] [main] user.language = en
   [testng] [2024-10-16 06:39:35,075] [main] user.country = ${user.country}
   [testng] [2024-10-16 06:39:35,076] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-16 06:41:37,653] [main] ----------------------------------------
   [testng] [2024-10-16 06:41:37,654] [main] Total files: 25
   [testng] [2024-10-16 06:41:37,654] [main] Scan time: 122.577 s (4903 ms/file)
   [testng] [2024-10-16 06:41:37,654] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-16 06:44:36,845] [pool-1-thread-1] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] 06:44:36,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:44:36,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:36,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_06-44-36.log]
   [testng] 06:44:36,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5575bfac - End of configuration.
   [testng] [2024-10-16 06:44:39,291] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] 06:44:39,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 06:44:39,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:39,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_06-44-39.log]
   [testng] 06:44:39,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391287af - End of configuration.
   [testng] [2024-10-16 06:44:39,725] [pool-1-thread-11] Initializing /data/pang/unproc-auto: 
   [testng] 06:44:39,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 06:44:39,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:39,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_06-44-39.log]
   [testng] 06:44:39,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac45a98 - End of configuration.
   [testng] [2024-10-16 06:44:43,030] [pool-1-thread-10] Initializing /data/imagic/13008.dm2: 
   [testng] 06:44:43,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 06:44:43,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:43,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_06-44-43.log]
   [testng] 06:44:43,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d10b9ed - End of configuration.
   [testng] [2024-10-16 06:44:45,723] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] 06:44:45,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 06:44:45,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:45,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_06-44-45.log]
   [testng] 06:44:45,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b44ab50 - End of configuration.
   [testng] [2024-10-16 06:44:46,146] [pool-1-thread-8] Initializing /data/pang/10500x-o4: 
   [testng] 06:44:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 06:44:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:46,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_06-44-46.log]
   [testng] 06:44:46,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd082d7 - End of configuration.
   [testng] [2024-10-16 06:44:48,605] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 06:44:48,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 06:44:48,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:48,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_06-44-48.log]
   [testng] 06:44:48,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55cfa29 - End of configuration.
   [testng] [2024-10-16 06:44:48,979] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2: 
   [testng] 06:44:48,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 06:44:48,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:48,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_06-44-48.log]
   [testng] 06:44:48,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bc9b65a - End of configuration.
   [testng] [2024-10-16 06:44:51,350] [pool-1-thread-5] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 06:44:51,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 06:44:51,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:51,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_06-44-51.log]
   [testng] 06:44:51,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@558d77fb - End of configuration.
   [testng] [2024-10-16 06:44:54,092] [pool-1-thread-4] Initializing /data/pang/grating025k.dm2: 
   [testng] 06:44:54,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 06:44:54,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:54,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_06-44-54.log]
   [testng] 06:44:54,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59cdcac8 - End of configuration.
   [testng] [2024-10-16 06:44:56,924] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] 06:44:56,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 06:44:56,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:56,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_06-44-56.log]
   [testng] 06:44:56,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@596db2ba - End of configuration.
   [testng] [2024-10-16 06:44:59,609] [pool-1-thread-2] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] 06:44:59,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:44:59,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:44:59,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_06-44-59.log]
   [testng] 06:44:59,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26469cc2 - End of configuration.
   [testng] [2024-10-16 06:45:22,958] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] [2024-10-16 06:45:23,639] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] [2024-10-16 06:45:24,312] [pool-1-thread-12] Initializing /data/pang/signed: 
   [testng] [2024-10-16 06:45:37,034] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] [2024-10-16 06:45:39,686] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] [2024-10-16 06:45:40,212] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 6 minutes 27 seconds
Finished: SUCCESS