Started by upstream project "BIOFORMATS-test-repo" build number 222 originally caused by: Started by upstream project "Trigger" build number 249 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins882104976550158163.sh + '[' avi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35274_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:39:18,060 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:39:18,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 08:39:18,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:39:18,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:39:18,062 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:39:18,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:39:18,063 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:39:18,063 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:39:18,063 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:39:18,064 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:39:18,064 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:39:18,065 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:39:18,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:39:18,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:39:18,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:39:18,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:39:18,251 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:39:18,251 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:39:18,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:39:18,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:39:18,252 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 08:39:18,253 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 08:39:18,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-16 08:39:18,261] [main] java.version = 17.0.2 [testng] 08:39:18,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:39:18,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:18,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_08-39-18.log] [testng] 08:39:18,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-16 08:39:18,312] [main] testng.directory = /data [testng] [2024-10-16 08:39:18,312] [main] testng.configDirectory = /config [testng] [2024-10-16 08:39:18,325] [main] testng.multiplier = 1.0 [testng] [2024-10-16 08:39:18,326] [main] testng.in-memory = false [testng] [2024-10-16 08:39:18,326] [main] testng.allow-missing = false [testng] [2024-10-16 08:39:18,326] [main] user.language = en [testng] [2024-10-16 08:39:18,327] [main] user.country = ${user.country} [testng] [2024-10-16 08:39:18,327] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-16 08:39:39,364] [main] ---------------------------------------- [testng] [2024-10-16 08:39:39,364] [main] Total files: 40 [testng] [2024-10-16 08:39:39,364] [main] Scan time: 21.037 s (525 ms/file) [testng] [2024-10-16 08:39:39,365] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-16 08:42:28,797] [pool-1-thread-1] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 08:42:28,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:42:28,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:28,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_08-42-28.log] [testng] 08:42:28,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4103b7 - End of configuration. [testng] [2024-10-16 08:42:30,800] [pool-1-thread-12] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 08:42:30,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:42:30,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:30,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_08-42-30.log] [testng] 08:42:30,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7702ba8b - End of configuration. [testng] [2024-10-16 08:42:32,450] [pool-1-thread-11] Initializing /data/ascb/TIRF.avi: [testng] 08:42:32,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:42:32,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:32,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_08-42-32.log] [testng] 08:42:32,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77737ec1 - End of configuration. [testng] [2024-10-16 08:42:34,581] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 08:42:34,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:42:34,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:34,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_08-42-34.log] [testng] 08:42:34,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41880169 - End of configuration. [testng] [2024-10-16 08:42:50,433] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 08:42:50,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:42:50,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:50,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_08-42-50.log] [testng] 08:42:50,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@395328b7 - End of configuration. [testng] [2024-10-16 08:42:52,802] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 08:42:52,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:42:52,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:52,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_08-42-52.log] [testng] 08:42:52,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb1210a - End of configuration. [testng] [2024-10-16 08:42:55,206] [pool-1-thread-7] Initializing /data/qa-11011/M-flow10001.avi: [testng] 08:42:55,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:42:55,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:55,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_08-42-55.log] [testng] 08:42:55,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540a1b32 - End of configuration. [testng] [2024-10-16 08:42:57,616] [pool-1-thread-6] Initializing /data/curtis/mri-stack-bf.avi: [testng] 08:42:57,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:42:57,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:57,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_08-42-57.log] [testng] 08:42:57,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53f5c625 - End of configuration. [testng] [2024-10-16 08:42:59,986] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 08:42:59,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:42:59,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:42:59,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_08-42-59.log] [testng] 08:42:59,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2939ecc9 - End of configuration. [testng] [2024-10-16 08:43:02,298] [pool-1-thread-4] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] 08:43:02,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:43:02,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:02,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_08-43-02.log] [testng] 08:43:02,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28cdffc7 - End of configuration. [testng] [2024-10-16 08:43:04,666] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] 08:43:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:43:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:04,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_08-43-04.log] [testng] 08:43:04,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48e00598 - End of configuration. [testng] [2024-10-16 08:43:06,994] [pool-1-thread-2] Initializing /data/william/worm.avi: [testng] 08:43:06,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:43:06,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:06,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_08-43-06.log] [testng] 08:43:06,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@791985ea - End of configuration. [testng] [2024-10-16 08:43:26,939] [pool-1-thread-6] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-10-16 08:43:29,004] [pool-1-thread-8] Initializing /data/kurt/63x_6um.avi: [testng] [2024-10-16 08:43:30,769] [pool-1-thread-7] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-10-16 08:43:32,470] [pool-1-thread-3] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-10-16 08:43:34,207] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-10-16 08:43:35,950] [pool-1-thread-2] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-10-16 08:43:37,611] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-10-16 08:43:39,223] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-10-16 08:43:40,950] [pool-1-thread-5] Initializing /data/kurt/40x_6um.avi: [testng] [2024-10-16 08:43:42,724] [pool-1-thread-11] Initializing /data/chris/APZ04_009.avi: [testng] [2024-10-16 08:43:56,714] [pool-1-thread-1] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-10-16 08:44:06,429] [pool-1-thread-10] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-10-16 08:44:16,253] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-10-16 08:44:17,927] [pool-1-thread-3] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-10-16 08:44:19,594] [pool-1-thread-9] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-10-16 08:44:21,236] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-10-16 08:44:22,860] [pool-1-thread-8] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-10-16 08:44:24,551] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-10-16 08:44:26,152] [pool-1-thread-5] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-10-16 08:44:27,698] [pool-1-thread-2] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-10-16 08:44:29,342] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2024-10-16 08:44:30,969] [pool-1-thread-1] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-10-16 08:44:40,475] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-10-16 08:44:42,396] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2024-10-16 08:44:49,036] [pool-1-thread-5] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-10-16 08:44:50,925] [pool-1-thread-6] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 51 seconds Finished: SUCCESS