Started by upstream project "BIOFORMATS-test-repo" build number 27
originally caused by:
Started by upstream project "Trigger" build number 30
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1903847185214462163.sh
+ '[' leo = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3534_merge_ci -v /uod/idr/repos/curated/leo:/data -v /uod/idr-scratch/merge-ci/curated/leo:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:20:14,721 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:20:14,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:20:14,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:20:14,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:20:14,724 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:20:14,724 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:20:14,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:20:14,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:20:14,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:20:14,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:20:14,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:20:14,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:20:14,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:20:14,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:20:15,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:20:15,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:20:15,011 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:20:15,011 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:20:15,011 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:20:15,011 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:20:15,012 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:20:15,013 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:20:15,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-08 02:20:15,023] [main] java.version = 1.8.0_342
[testng] 02:20:15,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:20:15,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:15,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-08_02-20-15.log]
[testng] 02:20:15,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-08 02:20:15,078] [main] testng.directory = /data
[testng] [2024-04-08 02:20:15,078] [main] testng.configDirectory = /config
[testng] [2024-04-08 02:20:15,091] [main] testng.multiplier = 1.0
[testng] [2024-04-08 02:20:15,092] [main] testng.in-memory = false
[testng] [2024-04-08 02:20:15,092] [main] testng.allow-missing = false
[testng] [2024-04-08 02:20:15,092] [main] user.language = fr
[testng] [2024-04-08 02:20:15,092] [main] user.country = FR
[testng] [2024-04-08 02:20:15,092] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-08 02:20:15,662] [main] ----------------------------------------
[testng] [2024-04-08 02:20:15,662] [main] Total files: 10
[testng] [2024-04-08 02:20:15,662] [main] Scan time: 0.57 s (57 ms/file)
[testng] [2024-04-08 02:20:15,662] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 9 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-08 02:20:16,644] [pool-1-thread-1] Initializing /data/public/dmankus/2160grating 3072.tif:
[testng] 02:20:16,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:20:16,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-08_02-20-16.log]
[testng] 02:20:16,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c5399b - End of configuration.
[testng] [2024-04-08 02:20:16,703] [pool-1-thread-9] Initializing /data/public/dmankus/2160grating 1024.tif:
[testng] 02:20:16,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:20:16,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-08_02-20-16.log]
[testng] 02:20:16,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bfa2657 - End of configuration.
[testng] [2024-04-08 02:20:16,740] [pool-1-thread-8] Initializing /data/qa-27408/Glc-1P+Cellob+CDP_72 h -04.tif:
[testng] 02:20:16,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:20:16,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-08_02-20-16.log]
[testng] 02:20:16,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a550ea - End of configuration.
[testng] [2024-04-08 02:20:16,769] [pool-1-thread-7] Initializing /data/qa-16912/Zeiss_supra_SEM.tif:
[testng] 02:20:16,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:20:16,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-08_02-20-16.log]
[testng] 02:20:16,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b30196 - End of configuration.
[testng] [2024-04-08 02:20:16,799] [pool-1-thread-6] Initializing /data/misc/issue_image.tif:
[testng] 02:20:16,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:20:16,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-08_02-20-16.log]
[testng] 02:20:16,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6066dead - End of configuration.
[testng] [2024-04-08 02:20:16,819] [pool-1-thread-5] Initializing /data/steve/Ewald B/LEO435_SEM.TIF:
[testng] 02:20:16,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:20:16,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-08_02-20-16.log]
[testng] 02:20:16,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f477692 - End of configuration.
[testng] [2024-04-08 02:20:16,845] [pool-1-thread-4] Initializing /data/pablo/sample.tif:
[testng] 02:20:16,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:20:16,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-08_02-20-16.log]
[testng] 02:20:16,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@97933d3 - End of configuration.
[testng] [2024-04-08 02:20:16,874] [pool-1-thread-3] Initializing /data/steve/Ewald B/MHUSV02.SXM:
[testng] 02:20:16,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:20:16,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-08_02-20-16.log]
[testng] 02:20:16,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d53fff1 - End of configuration.
[testng] [2024-04-08 02:20:16,906] [pool-1-thread-2] Initializing /data/public/dmankus/2160grating 512.tif:
[testng] 02:20:16,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:20:16,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:16,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-08_02-20-16.log]
[testng] 02:20:16,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3338150c - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 477, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS