Started by upstream project "BIOFORMATS-test-repo" build number 223
originally caused by:
Started by upstream project "Trigger" build number 250
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5140410589734262302.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35348_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:24:56,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:24:56,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 01:24:56,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:24:56,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:24:56,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:24:56,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:24:56,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:24:56,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:24:56,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:24:56,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:24:56,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:24:56,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:24:56,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:24:56,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:24:56,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:24:56,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:24:56,647 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:24:56,647 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:24:56,648 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:24:56,648 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:24:56,648 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 01:24:56,649 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 01:24:56,649 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-17 01:24:56,658] [main] java.version = 21
[testng] 01:24:56,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:24:56,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:56,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_01-24-56.log]
[testng] 01:24:56,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-17 01:24:56,706] [main] testng.directory = /data
[testng] [2024-10-17 01:24:56,706] [main] testng.configDirectory = /config
[testng] [2024-10-17 01:24:56,714] [main] testng.multiplier = 1.0
[testng] [2024-10-17 01:24:56,715] [main] testng.in-memory = false
[testng] [2024-10-17 01:24:56,715] [main] testng.allow-missing = false
[testng] [2024-10-17 01:24:56,715] [main] user.language = en
[testng] [2024-10-17 01:24:56,715] [main] user.country = ${user.country}
[testng] [2024-10-17 01:24:56,715] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-17 01:24:57,193] [main] ----------------------------------------
[testng] [2024-10-17 01:24:57,193] [main] Total files: 21
[testng] [2024-10-17 01:24:57,193] [main] Scan time: 0.478 s (22 ms/file)
[testng] [2024-10-17 01:24:57,193] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-17 01:25:31,008] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim:
[testng] 01:25:31,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:25:31,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:31,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_01-25-31.log]
[testng] 01:25:31,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f06de50 - End of configuration.
[testng] [2024-10-17 01:25:32,929] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim:
[testng] 01:25:32,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:25:32,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:32,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_01-25-32.log]
[testng] 01:25:32,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b2a7d18 - End of configuration.
[testng] [2024-10-17 01:25:34,913] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim:
[testng] 01:25:34,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:25:34,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:34,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_01-25-34.log]
[testng] 01:25:34,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe97e56 - End of configuration.
[testng] [2024-10-17 01:25:36,620] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim:
[testng] 01:25:36,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:25:36,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:36,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_01-25-36.log]
[testng] 01:25:36,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2032d1e9 - End of configuration.
[testng] [2024-10-17 01:25:38,207] [pool-1-thread-9] Initializing /data/venu/Kontrolle0013.lim:
[testng] 01:25:38,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:25:38,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:38,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_01-25-38.log]
[testng] 01:25:38,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f823a69 - End of configuration.
[testng] [2024-10-17 01:25:39,773] [pool-1-thread-8] Initializing /data/venu/Kontrolle0012.lim:
[testng] 01:25:39,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:25:39,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:39,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_01-25-39.log]
[testng] 01:25:39,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420a4eee - End of configuration.
[testng] [2024-10-17 01:25:40,898] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim:
[testng] 01:25:40,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:25:40,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:40,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_01-25-40.log]
[testng] 01:25:40,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281dd3e8 - End of configuration.
[testng] [2024-10-17 01:25:42,302] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim:
[testng] 01:25:42,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:25:42,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:42,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_01-25-42.log]
[testng] 01:25:42,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50413c65 - End of configuration.
[testng] [2024-10-17 01:25:43,969] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim:
[testng] 01:25:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:25:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:43,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_01-25-43.log]
[testng] 01:25:43,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7c7325 - End of configuration.
[testng] [2024-10-17 01:25:45,328] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim:
[testng] 01:25:45,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:25:45,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:45,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_01-25-45.log]
[testng] 01:25:45,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ab2e997 - End of configuration.
[testng] [2024-10-17 01:25:46,871] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim:
[testng] 01:25:46,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:25:46,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:46,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_01-25-46.log]
[testng] 01:25:46,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a07e21f - End of configuration.
[testng] [2024-10-17 01:25:48,493] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim:
[testng] 01:25:48,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:25:48,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_01-25-48.log]
[testng] 01:25:48,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170c98bf - End of configuration.
[testng] [2024-10-17 01:26:08,013] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim:
[testng] [2024-10-17 01:26:09,702] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-10-17 01:26:12,008] [pool-1-thread-4] Initializing /data/venu/Kontrolle0005.lim:
[testng] [2024-10-17 01:26:12,754] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim:
[testng] [2024-10-17 01:26:13,910] [pool-1-thread-3] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-10-17 01:26:15,747] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim:
[testng] [2024-10-17 01:26:17,445] [pool-1-thread-12] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2024-10-17 01:26:18,911] [pool-1-thread-11] Initializing /data/venu/Kontrolle0015.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 40 seconds
Finished: SUCCESS