Started by upstream project "BIOFORMATS-test-repo" build number 223
originally caused by:
Started by upstream project "Trigger" build number 250
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2516040690346393707.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35414_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 06:57:34,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:57:34,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 06:57:34,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:57:34,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:57:34,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:57:34,020 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:57:34,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:57:34,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:57:34,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:57:34,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:57:34,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:57:34,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:57:34,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:57:34,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:57:34,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:57:34,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:57:34,211 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:57:34,212 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:57:34,212 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:57:34,212 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:57:34,212 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 06:57:34,213 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 06:57:34,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-17 06:57:34,222] [main] java.version = 21
[testng] 06:57:34,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:57:34,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:57:34,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_06-57-34.log]
[testng] 06:57:34,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-17 06:57:34,271] [main] testng.directory = /data
[testng] [2024-10-17 06:57:34,271] [main] testng.configDirectory = /config
[testng] [2024-10-17 06:57:34,279] [main] testng.multiplier = 1.0
[testng] [2024-10-17 06:57:34,280] [main] testng.in-memory = false
[testng] [2024-10-17 06:57:34,280] [main] testng.allow-missing = false
[testng] [2024-10-17 06:57:34,280] [main] user.language = en
[testng] [2024-10-17 06:57:34,280] [main] user.country = ${user.country}
[testng] [2024-10-17 06:57:34,280] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-17 06:57:43,302] [main] ----------------------------------------
[testng] [2024-10-17 06:57:43,302] [main] Total files: 16
[testng] [2024-10-17 06:57:43,303] [main] Scan time: 9.022 s (563 ms/file)
[testng] [2024-10-17 06:57:43,303] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-17 06:58:36,018] [pool-1-thread-1] Initializing /data/samples/5440.afi:
[testng] 06:58:36,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:58:36,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:36,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_06-58-36.log]
[testng] 06:58:36,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ad8ad10 - End of configuration.
[testng] [2024-10-17 06:58:38,078] [pool-1-thread-12] Initializing /data/samples/5383.afi:
[testng] 06:58:38,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:58:38,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:38,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_06-58-38.log]
[testng] 06:58:38,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62dce629 - End of configuration.
[testng] [2024-10-17 06:58:39,001] [pool-1-thread-11] Initializing /data/samples/5339.afi:
[testng] 06:58:39,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:58:39,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:39,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_06-58-39.log]
[testng] 06:58:39,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c606689 - End of configuration.
[testng] [2024-10-17 06:58:41,367] [pool-1-thread-10] Initializing /data/samples/5400.afi:
[testng] 06:58:41,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:58:41,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:41,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_06-58-41.log]
[testng] 06:58:41,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ffc12ef - End of configuration.
[testng] [2024-10-17 06:58:44,016] [pool-1-thread-9] Initializing /data/samples/5358.afi:
[testng] 06:58:44,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:58:44,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:44,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_06-58-44.log]
[testng] 06:58:44,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a672113 - End of configuration.
[testng] [2024-10-17 06:58:47,035] [pool-1-thread-8] Initializing /data/samples/5387.afi:
[testng] 06:58:47,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:58:47,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:47,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_06-58-47.log]
[testng] 06:58:47,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e6f0245 - End of configuration.
[testng] [2024-10-17 06:58:49,708] [pool-1-thread-7] Initializing /data/samples/5347.afi:
[testng] 06:58:49,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:58:49,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:49,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_06-58-49.log]
[testng] 06:58:49,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba2cebc - End of configuration.
[testng] [2024-10-17 06:58:50,641] [pool-1-thread-6] Initializing /data/samples/5343.afi:
[testng] 06:58:50,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:58:50,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:50,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_06-58-50.log]
[testng] 06:58:50,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74b1f578 - End of configuration.
[testng] [2024-10-17 06:58:52,899] [pool-1-thread-5] Initializing /data/samples/5351.afi:
[testng] 06:58:52,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:58:52,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:52,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_06-58-52.log]
[testng] 06:58:52,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15647d95 - End of configuration.
[testng] [2024-10-17 06:58:55,785] [pool-1-thread-4] Initializing /data/samples/5446.afi:
[testng] 06:58:55,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:58:55,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:55,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_06-58-55.log]
[testng] 06:58:55,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a927300 - End of configuration.
[testng] [2024-10-17 06:58:58,703] [pool-1-thread-3] Initializing /data/samples/5365.afi:
[testng] 06:58:58,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:58:58,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:58:58,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_06-58-58.log]
[testng] 06:58:58,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cfc718b - End of configuration.
[testng] [2024-10-17 06:59:00,772] [pool-1-thread-2] Initializing /data/samples/5371.afi:
[testng] 06:59:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:59:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:59:00,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_06-59-00.log]
[testng] 06:59:00,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d958f26 - End of configuration.
[testng] [2024-10-17 07:00:15,683] [pool-1-thread-9] Initializing /data/samples/5407.afi:
[testng] [2024-10-17 07:00:18,290] [pool-1-thread-11] Initializing /data/samples/5414.afi:
[testng] [2024-10-17 07:00:21,251] [pool-1-thread-12] Initializing /data/samples/5306.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 3 seconds
Finished: SUCCESS