Started by upstream project "BIOFORMATS-test-repo" build number 225
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins423956147117746440.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35432_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 11:08:54,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 11:08:54,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 11:08:54,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:08:54,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:08:54,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:08:54,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:08:54,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:08:54,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:08:54,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:08:54,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:08:54,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:08:54,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:08:54,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:08:54,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:08:54,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:08:54,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:08:54,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:08:54,257 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:08:54,257 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:08:54,258 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:08:54,258 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 11:08:54,259 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 11:08:54,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-17 11:08:54,267] [main] java.version = 21
[testng] 11:08:54,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:08:54,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:54,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-08-54.log]
[testng] 11:08:54,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-17 11:08:54,312] [main] testng.directory = /data
[testng] [2024-10-17 11:08:54,312] [main] testng.configDirectory = /config
[testng] [2024-10-17 11:08:54,320] [main] testng.multiplier = 1.0
[testng] [2024-10-17 11:08:54,321] [main] testng.in-memory = false
[testng] [2024-10-17 11:08:54,321] [main] testng.allow-missing = false
[testng] [2024-10-17 11:08:54,321] [main] user.language = en
[testng] [2024-10-17 11:08:54,321] [main] user.country = ${user.country}
[testng] [2024-10-17 11:08:54,321] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-17 11:08:55,527] [main] ----------------------------------------
[testng] [2024-10-17 11:08:55,527] [main] Total files: 36
[testng] [2024-10-17 11:08:55,527] [main] Scan time: 1.206 s (33 ms/file)
[testng] [2024-10-17 11:08:55,528] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-17 11:08:58,632] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx:
[testng] 11:08:58,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 11:08:58,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_11-08-58.log]
[testng] 11:08:58,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585860a2 - End of configuration.
[testng] [2024-10-17 11:08:58,671] [pool-1-thread-12] Initializing /data/generated/mri-stack6.pcx:
[testng] 11:08:58,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 11:08:58,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_11-08-58.log]
[testng] 11:08:58,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a19f1cf - End of configuration.
[testng] [2024-10-17 11:08:58,711] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx:
[testng] 11:08:58,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 11:08:58,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_11-08-58.log]
[testng] 11:08:58,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d9006ce - End of configuration.
[testng] [2024-10-17 11:08:58,745] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx:
[testng] 11:08:58,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 11:08:58,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_11-08-58.log]
[testng] 11:08:58,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@748b43a3 - End of configuration.
[testng] [2024-10-17 11:08:58,774] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx:
[testng] 11:08:58,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 11:08:58,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_11-08-58.log]
[testng] 11:08:58,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233bbffd - End of configuration.
[testng] [2024-10-17 11:08:58,812] [pool-1-thread-8] Initializing /data/generated/mri-stack4.pcx:
[testng] 11:08:58,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 11:08:58,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_11-08-58.log]
[testng] 11:08:58,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2ff9cb - End of configuration.
[testng] [2024-10-17 11:08:58,853] [pool-1-thread-7] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] 11:08:58,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 11:08:58,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_11-08-58.log]
[testng] 11:08:58,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b4eea6f - End of configuration.
[testng] [2024-10-17 11:08:58,887] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx:
[testng] 11:08:58,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 11:08:58,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_11-08-58.log]
[testng] 11:08:58,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b859d5b - End of configuration.
[testng] [2024-10-17 11:08:58,923] [pool-1-thread-5] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] 11:08:58,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 11:08:58,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_11-08-58.log]
[testng] 11:08:58,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6ce2c6 - End of configuration.
[testng] [2024-10-17 11:08:58,962] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx:
[testng] 11:08:58,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 11:08:58,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_11-08-58.log]
[testng] 11:08:58,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2adf31de - End of configuration.
[testng] [2024-10-17 11:08:58,992] [pool-1-thread-3] Initializing /data/generated/mri-stack2.pcx:
[testng] 11:08:58,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 11:08:58,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:58,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_11-08-58.log]
[testng] 11:08:58,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c016ea - End of configuration.
[testng] [2024-10-17 11:08:59,031] [pool-1-thread-2] Initializing /data/generated/mri-stack19.pcx:
[testng] 11:08:59,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 11:08:59,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:08:59,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_11-08-59.log]
[testng] 11:08:59,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ad4fb32 - End of configuration.
[testng] [2024-10-17 11:09:05,238] [pool-1-thread-8] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-10-17 11:09:05,353] [pool-1-thread-1] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] [2024-10-17 11:09:05,415] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx:
[testng] [2024-10-17 11:09:05,450] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx:
[testng] [2024-10-17 11:09:05,481] [pool-1-thread-6] Initializing /data/generated/mri-stack10.pcx:
[testng] [2024-10-17 11:09:05,534] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx:
[testng] [2024-10-17 11:09:05,558] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx:
[testng] [2024-10-17 11:09:05,605] [pool-1-thread-12] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-10-17 11:09:05,657] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-10-17 11:09:05,715] [pool-1-thread-4] Initializing /data/generated/mri-stack18.pcx:
[testng] [2024-10-17 11:09:05,769] [pool-1-thread-5] Initializing /data/generated/mri-stack7.pcx:
[testng] [2024-10-17 11:09:05,824] [pool-1-thread-7] Initializing /data/generated/mri-stack21.pcx:
[testng] [2024-10-17 11:09:09,396] [pool-1-thread-2] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-10-17 11:09:09,512] [pool-1-thread-8] Initializing /data/generated/mri-stack13.pcx:
[testng] [2024-10-17 11:09:09,629] [pool-1-thread-6] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-10-17 11:09:09,760] [pool-1-thread-3] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-10-17 11:09:09,828] [pool-1-thread-4] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-10-17 11:09:09,888] [pool-1-thread-10] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-10-17 11:09:09,960] [pool-1-thread-7] Initializing /data/generated/mri-stack14.pcx:
[testng] [2024-10-17 11:09:10,016] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] [2024-10-17 11:09:10,081] [pool-1-thread-9] Initializing /data/generated/mri-stack16.pcx:
[testng] [2024-10-17 11:09:10,134] [pool-1-thread-11] Initializing /data/generated/mri-stack17.pcx:
[testng] [2024-10-17 11:09:10,232] [pool-1-thread-1] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 23 seconds
Finished: SUCCESS