Started by upstream project "BIOFORMATS-test-repo" build number 225
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins69191488567950982.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35458_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 11:31:57,813 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 11:31:57,814 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 11:31:57,814 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:31:57,815 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:31:57,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:31:57,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:31:57,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:31:57,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:31:57,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:31:57,817 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:31:57,817 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:31:57,817 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:31:57,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:31:57,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:31:57,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:31:57,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:31:58,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:31:58,005 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:31:58,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:31:58,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:31:58,005 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 11:31:58,006 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 11:31:58,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-17 11:31:58,016] [main] java.version = 21
[testng] 11:31:58,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:31:58,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:31:58,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-31-58.log]
[testng] 11:31:58,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-17 11:31:58,064] [main] testng.directory = /data
[testng] [2024-10-17 11:31:58,064] [main] testng.configDirectory = /config
[testng] [2024-10-17 11:31:58,073] [main] testng.multiplier = 1.0
[testng] [2024-10-17 11:31:58,074] [main] testng.in-memory = false
[testng] [2024-10-17 11:31:58,074] [main] testng.allow-missing = false
[testng] [2024-10-17 11:31:58,074] [main] user.language = en
[testng] [2024-10-17 11:31:58,074] [main] user.country = ${user.country}
[testng] [2024-10-17 11:31:58,074] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-17 11:58:10,521] [main] ----------------------------------------
[testng] [2024-10-17 11:58:10,521] [main] Total files: 226
[testng] [2024-10-17 11:58:10,521] [main] Scan time: 1572.447 s (6957 ms/file)
[testng] [2024-10-17 11:58:10,522] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-17 12:29:57,032] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 12:29:57,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 12:29:57,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:29:57,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_12-29-57.log]
[testng] 12:29:57,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@209995f0 - End of configuration.
[testng] [2024-10-17 12:30:00,509] [pool-1-thread-12] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 12:30:00,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 12:30:00,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:00,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_12-30-00.log]
[testng] 12:30:00,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aaf9984 - End of configuration.
[testng] [2024-10-17 12:30:01,193] [pool-1-thread-11] Initializing /data/iplab/Blend_Final.IPL:
[testng] 12:30:01,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 12:30:01,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:01,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_12-30-01.log]
[testng] 12:30:01,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d6b8a81 - End of configuration.
[testng] [2024-10-17 12:30:01,862] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 12:30:01,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 12:30:01,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:01,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_12-30-01.log]
[testng] 12:30:01,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0217df - End of configuration.
[testng] [2024-10-17 12:30:05,925] [pool-1-thread-9] Initializing /data/iplab/Color Image.IPL:
[testng] 12:30:05,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 12:30:05,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:05,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_12-30-05.log]
[testng] 12:30:05,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eec66e8 - End of configuration.
[testng] [2024-10-17 12:30:06,231] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] 12:30:06,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 12:30:06,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:06,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_12-30-06.log]
[testng] 12:30:06,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6e3370 - End of configuration.
[testng] [2024-10-17 12:30:10,108] [pool-1-thread-7] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 12:30:10,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 12:30:10,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:10,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_12-30-10.log]
[testng] 12:30:10,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8364c3c - End of configuration.
[testng] [2024-10-17 12:30:10,439] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 12:30:10,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 12:30:10,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:10,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_12-30-10.log]
[testng] 12:30:10,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7914afa9 - End of configuration.
[testng] [2024-10-17 12:30:11,005] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 12:30:11,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 12:30:11,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:11,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_12-30-11.log]
[testng] 12:30:11,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d08a21 - End of configuration.
[testng] [2024-10-17 12:30:11,835] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL:
[testng] 12:30:11,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 12:30:11,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:11,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_12-30-11.log]
[testng] 12:30:11,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32645d12 - End of configuration.
[testng] [2024-10-17 12:30:12,751] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 12:30:12,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 12:30:12,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:12,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_12-30-12.log]
[testng] 12:30:12,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039a518 - End of configuration.
[testng] [2024-10-17 12:30:13,975] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 12:30:13,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 12:30:13,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:30:13,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_12-30-13.log]
[testng] 12:30:13,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38de452b - End of configuration.
[testng] [2024-10-17 12:30:26,708] [pool-1-thread-5] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-10-17 12:30:31,135] [pool-1-thread-9] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-10-17 12:30:31,936] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-10-17 12:30:32,941] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-10-17 12:30:36,603] [pool-1-thread-7] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-10-17 12:30:37,351] [pool-1-thread-11] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-10-17 12:30:38,185] [pool-1-thread-6] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-10-17 12:30:38,937] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-10-17 12:30:50,050] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] [2024-10-17 12:30:50,668] [pool-1-thread-6] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-10-17 12:30:55,071] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-10-17 12:30:57,662] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-10-17 12:31:01,377] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-10-17 12:31:04,277] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-10-17 12:31:16,449] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-10-17 12:31:23,273] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 59 minutes 40 seconds
Finished: SUCCESS