Started by upstream project "BIOFORMATS-test-repo" build number 226
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1432642274784096313.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35533_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 19:06:54,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 19:06:54,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 19:06:54,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 19:06:54,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 19:06:54,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 19:06:54,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 19:06:54,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 19:06:54,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 19:06:54,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 19:06:54,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 19:06:54,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 19:06:54,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 19:06:54,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 19:06:54,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 19:06:54,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 19:06:54,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 19:06:54,778 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 19:06:54,778 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 19:06:54,778 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 19:06:54,779 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 19:06:54,779 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 19:06:54,779 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 19:06:54,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-17 19:06:54,788] [main] java.version = 21
[testng] 19:06:54,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 19:06:54,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:06:54,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_19-06-54.log]
[testng] 19:06:54,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-17 19:06:54,833] [main] testng.directory = /data
[testng] [2024-10-17 19:06:54,834] [main] testng.configDirectory = /config
[testng] [2024-10-17 19:06:54,842] [main] testng.multiplier = 1.0
[testng] [2024-10-17 19:06:54,843] [main] testng.in-memory = false
[testng] [2024-10-17 19:06:54,843] [main] testng.allow-missing = false
[testng] [2024-10-17 19:06:54,843] [main] user.language = en
[testng] [2024-10-17 19:06:54,843] [main] user.country = ${user.country}
[testng] [2024-10-17 19:06:54,843] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-17 19:07:16,719] [main] ----------------------------------------
[testng] [2024-10-17 19:07:16,720] [main] Total files: 315
[testng] [2024-10-17 19:07:16,720] [main] Scan time: 21.876 s (69 ms/file)
[testng] [2024-10-17 19:07:16,721] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-17 19:30:03,574] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] 19:30:03,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 19:30:03,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:03,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_19-30-03.log]
[testng] 19:30:03,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f30044 - End of configuration.
[testng] [2024-10-17 19:30:06,691] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] 19:30:06,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 19:30:06,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:06,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_19-30-06.log]
[testng] 19:30:06,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24d949ca - End of configuration.
[testng] [2024-10-17 19:30:07,006] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] 19:30:07,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 19:30:07,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:07,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_19-30-07.log]
[testng] 19:30:07,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@343e85da - End of configuration.
[testng] [2024-10-17 19:30:07,859] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] 19:30:07,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 19:30:07,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:07,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_19-30-07.log]
[testng] 19:30:07,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf79357 - End of configuration.
[testng] [2024-10-17 19:30:08,764] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 19:30:08,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 19:30:08,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:08,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_19-30-08.log]
[testng] 19:30:08,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@777458f9 - End of configuration.
[testng] [2024-10-17 19:30:09,122] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] 19:30:09,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 19:30:09,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:09,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_19-30-09.log]
[testng] 19:30:09,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4865db19 - End of configuration.
[testng] [2024-10-17 19:30:09,998] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] 19:30:09,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 19:30:09,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:09,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_19-30-09.log]
[testng] 19:30:09,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5d9679 - End of configuration.
[testng] [2024-10-17 19:30:10,432] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] 19:30:10,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 19:30:10,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:10,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_19-30-10.log]
[testng] 19:30:10,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262cbe8b - End of configuration.
[testng] [2024-10-17 19:30:11,327] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] 19:30:11,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 19:30:11,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:11,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_19-30-11.log]
[testng] 19:30:11,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e5f2c6 - End of configuration.
[testng] [2024-10-17 19:30:11,859] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] 19:30:11,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 19:30:11,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:11,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_19-30-11.log]
[testng] 19:30:11,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21429387 - End of configuration.
[testng] [2024-10-17 19:30:12,682] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] 19:30:12,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 19:30:12,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:12,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_19-30-12.log]
[testng] 19:30:12,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d64550 - End of configuration.
[testng] [2024-10-17 19:30:13,269] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] 19:30:13,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 19:30:13,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:30:13,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_19-30-13.log]
[testng] 19:30:13,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67c995e9 - End of configuration.
[testng] [2024-10-17 19:30:24,676] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-10-17 19:30:25,521] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-17 19:30:26,681] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-10-17 19:30:29,161] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-17 19:30:30,044] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-17 19:30:30,922] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-17 19:30:31,640] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-17 19:30:32,453] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-17 19:30:33,565] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-17 19:30:41,837] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-17 19:30:42,962] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-17 19:30:47,532] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-17 19:30:49,048] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-17 19:30:51,611] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-17 19:30:53,742] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-17 19:30:55,511] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-17 19:31:04,205] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-10-17 19:31:06,298] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-10-17 19:31:07,839] [pool-1-thread-3] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-17 19:31:09,967] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-17 19:31:11,338] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-17 19:31:19,665] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-17 19:31:21,490] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-17 19:31:25,012] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-17 19:31:32,144] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-17 19:31:34,503] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-17 19:31:36,702] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-17 19:31:37,963] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-17 19:31:39,716] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-17 19:31:40,954] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-10-17 19:31:41,814] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-10-17 19:31:52,215] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-17 19:31:53,262] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-17 19:31:54,947] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-10-17 19:31:56,472] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-17 19:31:57,563] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-17 19:31:58,325] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-10-17 19:32:06,794] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-17 19:32:09,562] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-17 19:32:11,556] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-17 19:32:12,582] [pool-1-thread-3] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-17 19:32:16,528] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-17 19:32:17,993] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-17 19:32:21,732] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-17 19:32:22,699] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-17 19:32:24,866] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-17 19:32:33,014] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-17 19:32:36,479] [pool-1-thread-2] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-17 19:32:37,483] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-17 19:32:39,590] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-17 19:32:40,648] [pool-1-thread-5] Initializing /data/qa-17270/image1.oir:
[testng] [2024-10-17 19:32:43,244] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-17 19:32:44,291] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-17 19:32:55,936] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-17 19:32:56,642] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-17 19:32:57,745] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-17 19:33:01,100] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-17 19:33:02,573] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-17 19:33:08,230] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-10-17 19:33:09,853] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-17 19:33:21,273] [pool-1-thread-11] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-17 19:33:22,783] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-17 19:33:24,933] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-17 19:33:28,175] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-17 19:33:37,217] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-10-17 19:33:50,840] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-17 19:33:52,190] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-17 19:33:58,284] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-17 19:34:06,132] [pool-1-thread-12] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-10-17 19:34:07,772] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-17 19:34:22,946] [pool-1-thread-3] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-10-17 19:34:51,053] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-17 19:34:55,082] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-17 19:35:01,037] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-10-17 19:35:15,107] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-17 19:35:20,750] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-17 19:35:22,209] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-17 19:35:29,360] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-10-17 19:35:35,375] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-17 19:35:46,444] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-17 19:35:48,702] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-17 19:36:00,215] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-17 19:36:01,238] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-17 19:36:07,085] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-17 19:36:15,499] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-17 19:36:24,278] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-17 19:36:29,816] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-17 19:36:32,570] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-10-17 19:36:35,331] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-17 19:36:49,570] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-17 19:36:53,039] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-17 19:36:57,469] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-17 19:37:10,107] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-17 19:37:13,597] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-17 19:37:33,637] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-17 19:37:46,749] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-17 19:37:59,959] [pool-1-thread-11] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-17 19:38:06,164] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-10-17 19:38:13,298] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-17 19:38:19,735] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-17 19:38:23,349] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-17 19:38:25,529] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-17 19:38:42,738] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-17 19:38:47,635] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-17 19:38:48,608] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-10-17 19:38:49,670] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-17 19:38:58,094] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-17 19:39:11,822] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-17 19:39:14,791] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-17 19:39:18,997] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-17 19:39:20,196] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-17 19:39:21,614] [pool-1-thread-9] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-17 19:39:35,386] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-17 19:39:40,270] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-17 19:39:44,025] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-17 19:39:45,544] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-10-17 19:39:49,339] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-17 19:39:55,429] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-17 19:40:47,031] [pool-1-thread-11] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-17 19:40:54,695] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-10-17 19:40:58,849] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-17 19:41:02,178] [pool-1-thread-5] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-17 19:41:07,118] [pool-1-thread-6] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-17 19:41:10,817] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-17 19:41:19,890] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-10-17 19:41:21,225] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-17 19:41:24,777] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-17 19:41:26,661] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-17 19:41:28,833] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-17 19:41:30,261] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-17 19:41:43,977] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-17 19:41:45,422] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-17 19:41:50,770] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-17 19:41:53,449] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-17 19:41:54,845] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-17 19:41:57,080] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-17 19:41:58,481] [pool-1-thread-4] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-17 19:42:11,284] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-17 19:42:12,653] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-17 19:42:14,062] [pool-1-thread-5] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-17 19:42:19,838] [pool-1-thread-6] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-17 19:42:49,189] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-17 19:42:50,729] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-17 19:42:51,276] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-17 19:42:56,494] [pool-1-thread-12] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-17 19:42:58,457] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-17 19:43:01,417] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-17 19:43:03,062] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-17 19:43:07,449] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-17 19:43:09,253] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-17 19:43:13,323] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-17 19:43:18,869] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-17 19:43:19,758] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-17 19:43:20,793] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-17 19:43:23,418] [pool-1-thread-12] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-17 19:43:27,448] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-17 19:43:32,452] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-17 19:43:34,143] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-10-17 19:43:36,074] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-17 19:43:38,906] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-17 19:43:41,014] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-17 19:43:43,400] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-17 19:43:44,685] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-17 19:43:45,265] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-17 19:43:46,951] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-10-17 19:43:54,831] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-17 19:43:55,358] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-17 19:43:58,718] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-17 19:44:00,076] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-17 19:44:02,054] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-17 19:44:08,148] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-17 19:44:09,470] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-17 19:44:10,183] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-17 19:44:10,962] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-17 19:44:13,378] [pool-1-thread-5] Initializing /data/qa-17335/1.oir:
[testng] [2024-10-17 19:44:16,746] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-17 19:44:18,371] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-17 19:44:22,344] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-17 19:44:23,388] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-17 19:44:24,420] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 68 minutes 30 seconds
Finished: SUCCESS