Started by upstream project "BIOFORMATS-test-repo" build number 227
originally caused by:
Started by upstream project "Trigger" build number 252
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1037637084037311199.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35558_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:43:25,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:43:25,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 07:43:25,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:43:26,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:43:26,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:43:26,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:43:26,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:43:26,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:43:26,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:43:26,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:43:26,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:43:26,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:43:26,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:43:26,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:43:26,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:43:26,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:43:26,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:43:26,248 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:43:26,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:43:26,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:43:26,249 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 07:43:26,249 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 07:43:26,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 249 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-18 07:43:26,259] [main] java.version = 1.8.0_342
[testng] 07:43:26,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:43:26,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:26,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_07-43-26.log]
[testng] 07:43:26,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-18 07:43:26,307] [main] testng.directory = /data
[testng] [2024-10-18 07:43:26,307] [main] testng.configDirectory = /config
[testng] [2024-10-18 07:43:26,319] [main] testng.multiplier = 1.0
[testng] [2024-10-18 07:43:26,319] [main] testng.in-memory = false
[testng] [2024-10-18 07:43:26,319] [main] testng.allow-missing = false
[testng] [2024-10-18 07:43:26,319] [main] user.language = en
[testng] [2024-10-18 07:43:26,319] [main] user.country = ${user.country}
[testng] [2024-10-18 07:43:26,319] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-18 07:43:26,877] [main] ----------------------------------------
[testng] [2024-10-18 07:43:26,877] [main] Total files: 21
[testng] [2024-10-18 07:43:26,877] [main] Scan time: 0.557 s (26 ms/file)
[testng] [2024-10-18 07:43:26,877] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-18 07:43:42,313] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim:
[testng] 07:43:42,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:43:42,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:42,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_07-43-42.log]
[testng] 07:43:42,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cc9c90b - End of configuration.
[testng] [2024-10-18 07:43:42,879] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim:
[testng] 07:43:42,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:43:42,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:42,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_07-43-42.log]
[testng] 07:43:42,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d65987 - End of configuration.
[testng] [2024-10-18 07:43:43,477] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim:
[testng] 07:43:43,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:43:43,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:43,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_07-43-43.log]
[testng] 07:43:43,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@440b04a0 - End of configuration.
[testng] [2024-10-18 07:43:44,532] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim:
[testng] 07:43:44,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:43:44,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:44,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_07-43-44.log]
[testng] 07:43:44,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d06228 - End of configuration.
[testng] [2024-10-18 07:43:45,544] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim:
[testng] 07:43:45,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:43:45,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:45,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_07-43-45.log]
[testng] 07:43:45,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92259f6 - End of configuration.
[testng] [2024-10-18 07:43:46,297] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim:
[testng] 07:43:46,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:43:46,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:46,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_07-43-46.log]
[testng] 07:43:46,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f4a2d42 - End of configuration.
[testng] [2024-10-18 07:43:46,938] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim:
[testng] 07:43:46,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:43:46,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:46,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_07-43-46.log]
[testng] 07:43:46,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2e474e - End of configuration.
[testng] [2024-10-18 07:43:47,574] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim:
[testng] 07:43:47,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:43:47,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:47,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_07-43-47.log]
[testng] 07:43:47,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16850da4 - End of configuration.
[testng] [2024-10-18 07:43:48,187] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim:
[testng] 07:43:48,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:43:48,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:48,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_07-43-48.log]
[testng] 07:43:48,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c7e94db - End of configuration.
[testng] [2024-10-18 07:43:48,874] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim:
[testng] 07:43:48,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:43:48,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:48,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_07-43-48.log]
[testng] 07:43:48,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1663b109 - End of configuration.
[testng] [2024-10-18 07:43:49,538] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim:
[testng] 07:43:49,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:43:49,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:49,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_07-43-49.log]
[testng] 07:43:49,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67eddd8c - End of configuration.
[testng] [2024-10-18 07:43:50,229] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim:
[testng] 07:43:50,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:43:50,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:43:50,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_07-43-50.log]
[testng] 07:43:50,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ddc1b4 - End of configuration.
[testng] [2024-10-18 07:44:03,497] [pool-1-thread-1] Initializing /data/venu/Kontrolle0020.lim:
[testng] [2024-10-18 07:44:04,243] [pool-1-thread-7] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-10-18 07:44:04,939] [pool-1-thread-4] Initializing /data/venu/Kontrolle0013.lim:
[testng] [2024-10-18 07:44:05,669] [pool-1-thread-2] Initializing /data/venu/Kontrolle0021.lim:
[testng] [2024-10-18 07:44:06,398] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-10-18 07:44:07,122] [pool-1-thread-11] Initializing /data/venu/Kontrolle0002.lim:
[testng] [2024-10-18 07:44:07,864] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim:
[testng] [2024-10-18 07:44:08,612] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS