Started by upstream project "BIOFORMATS-test-repo" build number 227
originally caused by:
Started by upstream project "Trigger" build number 252
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9176911920685660615.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35581_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 09:17:06,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 09:17:06,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 09:17:06,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:17:06,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 09:17:06,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 09:17:06,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 09:17:06,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 09:17:06,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:17:06,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 09:17:06,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 09:17:06,864 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 09:17:06,864 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 09:17:07,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 09:17:07,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 09:17:07,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 09:17:07,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 09:17:07,116 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 09:17:07,116 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 09:17:07,116 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 09:17:07,117 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 09:17:07,117 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 09:17:07,117 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 09:17:07,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-18 09:17:07,127] [main] java.version = 1.8.0_342
[testng] 09:17:07,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:17:07,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:17:07,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_09-17-07.log]
[testng] 09:17:07,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-18 09:17:07,177] [main] testng.directory = /data
[testng] [2024-10-18 09:17:07,177] [main] testng.configDirectory = /config
[testng] [2024-10-18 09:17:07,189] [main] testng.multiplier = 1.0
[testng] [2024-10-18 09:17:07,189] [main] testng.in-memory = false
[testng] [2024-10-18 09:17:07,189] [main] testng.allow-missing = false
[testng] [2024-10-18 09:17:07,189] [main] user.language = en
[testng] [2024-10-18 09:17:07,189] [main] user.country = ${user.country}
[testng] [2024-10-18 09:17:07,189] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-18 09:17:07,755] [main] ----------------------------------------
[testng] [2024-10-18 09:17:07,755] [main] Total files: 21
[testng] [2024-10-18 09:17:07,755] [main] Scan time: 0.566 s (26 ms/file)
[testng] [2024-10-18 09:17:07,755] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-18 09:18:05,771] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA:
[testng] 09:18:05,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 09:18:05,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:05,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_09-18-05.log]
[testng] 09:18:05,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c1f5721 - End of configuration.
[testng] [2024-10-18 09:18:08,367] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA:
[testng] 09:18:08,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 09:18:08,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:08,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_09-18-08.log]
[testng] 09:18:08,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1853b49a - End of configuration.
[testng] [2024-10-18 09:18:10,975] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] 09:18:10,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 09:18:10,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:10,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_09-18-10.log]
[testng] 09:18:10,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@733120b8 - End of configuration.
[testng] [2024-10-18 09:18:13,503] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] 09:18:13,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 09:18:13,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:13,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_09-18-13.log]
[testng] 09:18:13,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe41c39 - End of configuration.
[testng] [2024-10-18 09:18:16,061] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA:
[testng] 09:18:16,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 09:18:16,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:16,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_09-18-16.log]
[testng] 09:18:16,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19391d58 - End of configuration.
[testng] [2024-10-18 09:18:18,789] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA:
[testng] 09:18:18,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 09:18:18,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:18,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_09-18-18.log]
[testng] 09:18:18,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c1092 - End of configuration.
[testng] [2024-10-18 09:18:21,396] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA:
[testng] 09:18:21,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 09:18:21,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:21,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_09-18-21.log]
[testng] 09:18:21,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27dbe9f - End of configuration.
[testng] [2024-10-18 09:18:24,013] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA:
[testng] 09:18:24,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 09:18:24,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:24,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_09-18-24.log]
[testng] 09:18:24,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4acaa4 - End of configuration.
[testng] [2024-10-18 09:18:26,647] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA:
[testng] 09:18:26,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 09:18:26,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:26,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_09-18-26.log]
[testng] 09:18:26,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@390d4af7 - End of configuration.
[testng] [2024-10-18 09:18:29,280] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA:
[testng] 09:18:29,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 09:18:29,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:29,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_09-18-29.log]
[testng] 09:18:29,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454507c4 - End of configuration.
[testng] [2024-10-18 09:18:31,848] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA:
[testng] 09:18:31,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 09:18:31,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:31,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_09-18-31.log]
[testng] 09:18:31,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4f5bba - End of configuration.
[testng] [2024-10-18 09:18:34,472] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA:
[testng] 09:18:34,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 09:18:34,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:18:34,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_09-18-34.log]
[testng] 09:18:34,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7e5e74 - End of configuration.
[testng] [2024-10-18 09:18:58,046] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA:
[testng] [2024-10-18 09:19:00,652] [pool-1-thread-9] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-10-18 09:19:03,282] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA:
[testng] [2024-10-18 09:19:05,955] [pool-1-thread-7] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-10-18 09:19:08,738] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA:
[testng] [2024-10-18 09:19:11,412] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA:
[testng] [2024-10-18 09:19:14,129] [pool-1-thread-10] Initializing /data/samples/UBW8.TGA:
[testng] [2024-10-18 09:19:16,869] [pool-1-thread-6] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-10-18 09:19:19,578] [pool-1-thread-12] Initializing /data/samples/UTC16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 39 seconds
Finished: SUCCESS