Started by upstream project "BIOFORMATS-test-repo" build number 227
originally caused by:
 Started by upstream project "Trigger" build number 252
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4570056300451844422.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35686_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 12:36:06,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 12:36:06,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 12:36:06,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 12:36:06,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 12:36:06,406 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 12:36:06,406 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 12:36:06,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 12:36:06,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 12:36:06,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 12:36:06,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 12:36:06,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 12:36:06,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 12:36:06,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 12:36:06,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 12:36:06,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 12:36:06,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 12:36:06,651 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 12:36:06,651 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 12:36:06,651 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 12:36:06,651 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 12:36:06,651 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 12:36:06,652 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 12:36:06,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-18 12:36:06,662] [main] java.version = 1.8.0_342
   [testng] 12:36:06,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 12:36:06,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:36:06,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_12-36-06.log]
   [testng] 12:36:06,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-10-18 12:36:06,712] [main] testng.directory = /data
   [testng] [2024-10-18 12:36:06,712] [main] testng.configDirectory = /config
   [testng] [2024-10-18 12:36:06,723] [main] testng.multiplier = 1.0
   [testng] [2024-10-18 12:36:06,723] [main] testng.in-memory = false
   [testng] [2024-10-18 12:36:06,723] [main] testng.allow-missing = false
   [testng] [2024-10-18 12:36:06,723] [main] user.language = en
   [testng] [2024-10-18 12:36:06,724] [main] user.country = ${user.country}
   [testng] [2024-10-18 12:36:06,724] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-10-18 12:36:18,514] [main] ----------------------------------------
   [testng] [2024-10-18 12:36:18,514] [main] Total files: 944
   [testng] [2024-10-18 12:36:18,514] [main] Scan time: 11.79 s (12 ms/file)
   [testng] [2024-10-18 12:36:18,514] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-18 12:37:40,549] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 12:37:40,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 12:37:40,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:40,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_12-37-40.log]
   [testng] 12:37:40,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e246782 - End of configuration.
   [testng] [2024-10-18 12:37:41,864] [pool-1-thread-12] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 12:37:41,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 12:37:41,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:41,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_12-37-41.log]
   [testng] 12:37:41,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d367868 - End of configuration.
   [testng] [2024-10-18 12:37:43,001] [pool-1-thread-11] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 12:37:43,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 12:37:43,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:43,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_12-37-43.log]
   [testng] 12:37:43,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4870fac - End of configuration.
   [testng] [2024-10-18 12:37:44,099] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: 
   [testng] 12:37:44,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 12:37:44,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:44,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_12-37-44.log]
   [testng] 12:37:44,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15c32168 - End of configuration.
   [testng] [2024-10-18 12:37:45,162] [pool-1-thread-9] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 12:37:45,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 12:37:45,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:45,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_12-37-45.log]
   [testng] 12:37:45,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35dd7b68 - End of configuration.
   [testng] [2024-10-18 12:37:46,261] [pool-1-thread-8] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 12:37:46,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 12:37:46,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:46,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_12-37-46.log]
   [testng] 12:37:46,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8cc08c - End of configuration.
   [testng] [2024-10-18 12:37:47,535] [pool-1-thread-7] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 12:37:47,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 12:37:47,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:47,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_12-37-47.log]
   [testng] 12:37:47,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bf06de - End of configuration.
   [testng] [2024-10-18 12:37:48,679] [pool-1-thread-6] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 12:37:48,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 12:37:48,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:48,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_12-37-48.log]
   [testng] 12:37:48,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae5a087 - End of configuration.
   [testng] [2024-10-18 12:37:49,978] [pool-1-thread-5] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 12:37:49,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 12:37:49,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:49,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_12-37-49.log]
   [testng] 12:37:49,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a2abde1 - End of configuration.
   [testng] [2024-10-18 12:37:51,220] [pool-1-thread-4] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 12:37:51,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 12:37:51,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:37:51,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_12-37-51.log]
   [testng] 12:37:51,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f1e31c - End of configuration.
   [testng] [2024-10-18 12:38:36,399] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 12:38:36,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 12:38:36,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:38:36,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_12-38-36.log]
   [testng] 12:38:36,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6f16bb - End of configuration.
   [testng] [2024-10-18 12:38:37,508] [pool-1-thread-2] Initializing /data/brian/Series002_z01.tif: 
   [testng] 12:38:37,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 12:38:37,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:38:37,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_12-38-37.log]
   [testng] 12:38:37,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@526aeb4e - End of configuration.
   [testng] [2024-10-18 12:38:46,601] [pool-1-thread-10] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] [2024-10-18 12:38:49,575] [pool-1-thread-2] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] [2024-10-18 12:38:51,841] [pool-1-thread-9] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 13:41:00,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 13:41:00,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:41:00,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_13-41-00.log]
   [testng] 13:41:00,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25aeb5ac - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 64 minutes 56 seconds
Finished: SUCCESS