Started by upstream project "BIOFORMATS-test-repo" build number 227
originally caused by:
Started by upstream project "Trigger" build number 252
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12089347047402546741.sh
+ '[' obf = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35695_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 12:56:32,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 12:56:32,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 12:56:32,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:56:32,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:56:32,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 12:56:32,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 12:56:32,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 12:56:32,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:56:32,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:56:32,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 12:56:32,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 12:56:32,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 12:56:32,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 12:56:32,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 12:56:32,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 12:56:32,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 12:56:32,625 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 12:56:32,625 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 12:56:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 12:56:32,626 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 12:56:32,626 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 12:56:32,627 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 12:56:32,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-18 12:56:32,636] [main] java.version = 1.8.0_342
[testng] 12:56:32,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 12:56:32,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:56:32,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_12-56-32.log]
[testng] 12:56:32,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-18 12:56:32,685] [main] testng.directory = /data
[testng] [2024-10-18 12:56:32,685] [main] testng.configDirectory = /config
[testng] [2024-10-18 12:56:32,697] [main] testng.multiplier = 1.0
[testng] [2024-10-18 12:56:32,698] [main] testng.in-memory = false
[testng] [2024-10-18 12:56:32,698] [main] testng.allow-missing = false
[testng] [2024-10-18 12:56:32,698] [main] user.language = en
[testng] [2024-10-18 12:56:32,698] [main] user.country = ${user.country}
[testng] [2024-10-18 12:56:32,698] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-18 12:56:53,102] [main] ----------------------------------------
[testng] [2024-10-18 12:56:53,102] [main] Total files: 12
[testng] [2024-10-18 12:56:53,102] [main] Scan time: 20.404 s (1700 ms/file)
[testng] [2024-10-18 12:56:53,102] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-18 12:57:16,245] [pool-1-thread-1] Initializing /data/qa-16895/Measurement1.msr:
[testng] 12:57:16,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 12:57:16,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:16,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_12-57-16.log]
[testng] 12:57:16,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a5941a3 - End of configuration.
[testng] [2024-10-18 12:57:18,017] [pool-1-thread-11] Initializing /data/qa-17111/before 1.msr:
[testng] 12:57:18,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 12:57:18,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:18,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_12-57-18.log]
[testng] 12:57:18,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3849fb68 - End of configuration.
[testng] [2024-10-18 12:57:20,486] [pool-1-thread-10] Initializing /data/public/ngladitz/v4/test-v4.obf:
[testng] 12:57:20,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 12:57:20,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:20,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_12-57-20.log]
[testng] 12:57:20,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76398291 - End of configuration.
[testng] [2024-10-18 12:57:22,292] [pool-1-thread-9] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf:
[testng] 12:57:22,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 12:57:22,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:22,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_12-57-22.log]
[testng] 12:57:22,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eaffaef - End of configuration.
[testng] [2024-10-18 12:57:24,477] [pool-1-thread-8] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf:
[testng] 12:57:24,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 12:57:24,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:24,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_12-57-24.log]
[testng] 12:57:24,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5d8ca5 - End of configuration.
[testng] [2024-10-18 12:57:26,191] [pool-1-thread-7] Initializing /data/bjoernthiel/20191106__zstack.msr:
[testng] 12:57:26,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 12:57:26,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:26,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_12-57-26.log]
[testng] 12:57:26,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@675928c4 - End of configuration.
[testng] [2024-10-18 12:57:27,928] [pool-1-thread-6] Initializing /data/qa-27923/test.obf:
[testng] 12:57:27,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 12:57:27,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:27,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_12-57-27.log]
[testng] 12:57:27,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d915236 - End of configuration.
[testng] [2024-10-18 12:57:29,600] [pool-1-thread-5] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf:
[testng] 12:57:29,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 12:57:29,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:29,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_12-57-29.log]
[testng] 12:57:29,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7911fd49 - End of configuration.
[testng] [2024-10-18 12:57:31,395] [pool-1-thread-4] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr:
[testng] 12:57:31,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 12:57:31,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:31,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_12-57-31.log]
[testng] 12:57:31,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ac012db - End of configuration.
[testng] [2024-10-18 12:57:33,142] [pool-1-thread-3] Initializing /data/public/ngladitz/v6/test-v6.obf:
[testng] 12:57:33,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 12:57:33,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:33,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_12-57-33.log]
[testng] 12:57:33,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e727c0f - End of configuration.
[testng] [2024-10-18 12:57:35,077] [pool-1-thread-2] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr:
[testng] 12:57:35,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 12:57:35,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:57:35,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_12-57-35.log]
[testng] 12:57:35,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e27369 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 37 seconds
Finished: SUCCESS