Started by upstream project "BIOFORMATS-test-repo" build number 227
originally caused by:
Started by upstream project "Trigger" build number 252
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16546624923475429512.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35698_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 13:00:27,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 13:00:27,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 13:00:27,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 13:00:27,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 13:00:27,778 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 13:00:27,778 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 13:00:27,778 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 13:00:27,779 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 13:00:27,779 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
[testng] 13:00:27,779 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
[testng] 13:00:27,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 600 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-18 13:00:27,789] [main] java.version = 1.8.0_342
[testng] 13:00:27,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 13:00:27,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:27,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_13-00-27.log]
[testng] 13:00:27,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-18 13:00:27,890] [main] testng.directory = /data
[testng] [2024-10-18 13:00:27,891] [main] testng.configDirectory = /config
[testng] [2024-10-18 13:00:27,928] [main] testng.multiplier = 1.0
[testng] [2024-10-18 13:00:27,929] [main] testng.in-memory = false
[testng] [2024-10-18 13:00:27,929] [main] testng.allow-missing = false
[testng] [2024-10-18 13:00:27,929] [main] user.language = en
[testng] [2024-10-18 13:00:27,929] [main] user.country = ${user.country}
[testng] [2024-10-18 13:00:27,929] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-18 13:00:32,791] [main] ----------------------------------------
[testng] [2024-10-18 13:00:32,791] [main] Total files: 17
[testng] [2024-10-18 13:00:32,791] [main] Scan time: 4.862 s (286 ms/file)
[testng] [2024-10-18 13:00:32,791] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-18 13:00:36,894] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 13:00:36,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 13:00:36,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:36,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_13-00-36.log]
[testng] 13:00:36,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29fb346a - End of configuration.
[testng] [2024-10-18 13:00:37,102] [pool-1-thread-12] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] 13:00:37,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 13:00:37,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:37,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_13-00-37.log]
[testng] 13:00:37,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375f7b74 - End of configuration.
[testng] [2024-10-18 13:00:37,334] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] 13:00:37,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 13:00:37,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:37,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_13-00-37.log]
[testng] 13:00:37,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ad204f - End of configuration.
[testng] [2024-10-18 13:00:37,582] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 13:00:37,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 13:00:37,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:37,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_13-00-37.log]
[testng] 13:00:37,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a99aa7 - End of configuration.
[testng] [2024-10-18 13:00:37,831] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 13:00:37,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 13:00:37,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:37,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_13-00-37.log]
[testng] 13:00:37,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa9fcbe - End of configuration.
[testng] [2024-10-18 13:00:38,056] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 13:00:38,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 13:00:38,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:38,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_13-00-38.log]
[testng] 13:00:38,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ffb7e7 - End of configuration.
[testng] [2024-10-18 13:00:38,685] [pool-1-thread-7] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] 13:00:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 13:00:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:38,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_13-00-38.log]
[testng] 13:00:38,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3312989c - End of configuration.
[testng] [2024-10-18 13:00:38,911] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 13:00:38,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 13:00:38,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:38,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_13-00-38.log]
[testng] 13:00:38,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5703e7f0 - End of configuration.
[testng] [2024-10-18 13:00:39,065] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 13:00:39,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 13:00:39,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:39,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_13-00-39.log]
[testng] 13:00:39,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@682b50e6 - End of configuration.
[testng] [2024-10-18 13:00:39,210] [pool-1-thread-4] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 13:00:39,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 13:00:39,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:39,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_13-00-39.log]
[testng] 13:00:39,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3684889 - End of configuration.
[testng] [2024-10-18 13:00:39,378] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 13:00:39,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 13:00:39,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:39,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_13-00-39.log]
[testng] 13:00:39,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a1a835 - End of configuration.
[testng] [2024-10-18 13:00:39,528] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 13:00:39,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 13:00:39,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 13:00:39,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_13-00-39.log]
[testng] 13:00:39,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715fd203 - End of configuration.
[testng] [2024-10-18 13:00:42,939] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] [2024-10-18 13:00:43,114] [pool-1-thread-6] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-10-18 13:00:43,272] [pool-1-thread-2] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] [2024-10-18 13:00:43,444] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] [2024-10-18 13:00:43,607] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 24 seconds
Finished: SUCCESS