Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16546624923475429512.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35698_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:00:27,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:00:27,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:00:27,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:00:27,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:00:27,778 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:00:27,778 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:00:27,778 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:00:27,779 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:00:27,779 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 13:00:27,779 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 13:00:27,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 600 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 13:00:27,789] [main] java.version = 1.8.0_342 [testng] 13:00:27,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:00:27,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:27,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_13-00-27.log] [testng] 13:00:27,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 13:00:27,890] [main] testng.directory = /data [testng] [2024-10-18 13:00:27,891] [main] testng.configDirectory = /config [testng] [2024-10-18 13:00:27,928] [main] testng.multiplier = 1.0 [testng] [2024-10-18 13:00:27,929] [main] testng.in-memory = false [testng] [2024-10-18 13:00:27,929] [main] testng.allow-missing = false [testng] [2024-10-18 13:00:27,929] [main] user.language = en [testng] [2024-10-18 13:00:27,929] [main] user.country = ${user.country} [testng] [2024-10-18 13:00:27,929] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 13:00:32,791] [main] ---------------------------------------- [testng] [2024-10-18 13:00:32,791] [main] Total files: 17 [testng] [2024-10-18 13:00:32,791] [main] Scan time: 4.862 s (286 ms/file) [testng] [2024-10-18 13:00:32,791] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 13:00:36,894] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm: [testng] 13:00:36,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:00:36,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:36,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_13-00-36.log] [testng] 13:00:36,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29fb346a - End of configuration. [testng] [2024-10-18 13:00:37,102] [pool-1-thread-12] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 13:00:37,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:00:37,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:37,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_13-00-37.log] [testng] 13:00:37,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375f7b74 - End of configuration. [testng] [2024-10-18 13:00:37,334] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 13:00:37,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:00:37,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:37,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_13-00-37.log] [testng] 13:00:37,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ad204f - End of configuration. [testng] [2024-10-18 13:00:37,582] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 13:00:37,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:00:37,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:37,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_13-00-37.log] [testng] 13:00:37,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a99aa7 - End of configuration. [testng] [2024-10-18 13:00:37,831] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 13:00:37,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:00:37,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:37,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_13-00-37.log] [testng] 13:00:37,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa9fcbe - End of configuration. [testng] [2024-10-18 13:00:38,056] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 13:00:38,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:00:38,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:38,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_13-00-38.log] [testng] 13:00:38,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ffb7e7 - End of configuration. [testng] [2024-10-18 13:00:38,685] [pool-1-thread-7] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 13:00:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:00:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:38,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_13-00-38.log] [testng] 13:00:38,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3312989c - End of configuration. [testng] [2024-10-18 13:00:38,911] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 13:00:38,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:00:38,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:38,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_13-00-38.log] [testng] 13:00:38,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5703e7f0 - End of configuration. [testng] [2024-10-18 13:00:39,065] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 13:00:39,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:00:39,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:39,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_13-00-39.log] [testng] 13:00:39,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@682b50e6 - End of configuration. [testng] [2024-10-18 13:00:39,210] [pool-1-thread-4] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 13:00:39,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:00:39,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:39,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_13-00-39.log] [testng] 13:00:39,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3684889 - End of configuration. [testng] [2024-10-18 13:00:39,378] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 13:00:39,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:00:39,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:39,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_13-00-39.log] [testng] 13:00:39,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a1a835 - End of configuration. [testng] [2024-10-18 13:00:39,528] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 13:00:39,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:00:39,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:39,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_13-00-39.log] [testng] 13:00:39,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715fd203 - End of configuration. [testng] [2024-10-18 13:00:42,939] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] [2024-10-18 13:00:43,114] [pool-1-thread-6] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-10-18 13:00:43,272] [pool-1-thread-2] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-10-18 13:00:43,444] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] [2024-10-18 13:00:43,607] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 seconds Finished: SUCCESS