Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10224181432799783119.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35699_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:00:51,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:00:51,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 13:00:51,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:00:51,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:00:51,183 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:00:51,183 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:00:51,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:00:51,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:00:51,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:00:51,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:00:51,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:00:51,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:00:51,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:00:51,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:00:51,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:00:51,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:00:51,434 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:00:51,434 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:00:51,434 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:00:51,435 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:00:51,435 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 13:00:51,436 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 13:00:51,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 13:00:51,445] [main] java.version = 1.8.0_342 [testng] 13:00:51,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:00:51,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:51,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_13-00-51.log] [testng] 13:00:51,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 13:00:51,494] [main] testng.directory = /data [testng] [2024-10-18 13:00:51,494] [main] testng.configDirectory = /config [testng] [2024-10-18 13:00:51,505] [main] testng.multiplier = 1.0 [testng] [2024-10-18 13:00:51,505] [main] testng.in-memory = false [testng] [2024-10-18 13:00:51,506] [main] testng.allow-missing = false [testng] [2024-10-18 13:00:51,506] [main] user.language = en [testng] [2024-10-18 13:00:51,506] [main] user.country = ${user.country} [testng] [2024-10-18 13:00:51,506] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 13:01:09,677] [main] ---------------------------------------- [testng] [2024-10-18 13:01:09,677] [main] Total files: 31 [testng] [2024-10-18 13:01:09,677] [main] Scan time: 18.17 s (586 ms/file) [testng] [2024-10-18 13:01:09,677] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 13:01:31,052] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] 13:01:31,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:01:31,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:31,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_13-01-31.log] [testng] 13:01:31,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58796c3e - End of configuration. [testng] [2024-10-18 13:01:31,592] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2: [testng] 13:01:31,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:01:31,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:31,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_13-01-31.log] [testng] 13:01:31,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ebc4dfa - End of configuration. [testng] [2024-10-18 13:01:32,192] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 13:01:32,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:01:32,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:32,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_13-01-32.log] [testng] 13:01:32,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3271ae53 - End of configuration. [testng] [2024-10-18 13:01:32,806] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx: [testng] 13:01:32,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:01:32,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:32,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_13-01-32.log] [testng] 13:01:32,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67506fdd - End of configuration. [testng] [2024-10-18 13:01:33,341] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] 13:01:33,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:01:33,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:33,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_13-01-33.log] [testng] 13:01:33,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ebd4e08 - End of configuration. [testng] [2024-10-18 13:01:34,015] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] 13:01:34,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:01:34,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:34,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_13-01-34.log] [testng] 13:01:34,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c3cac11 - End of configuration. [testng] [2024-10-18 13:01:34,662] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg: [testng] 13:01:34,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:01:34,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:34,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_13-01-34.log] [testng] 13:01:34,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a4a09d - End of configuration. [testng] [2024-10-18 13:01:35,037] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] 13:01:35,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:01:35,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:35,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_13-01-35.log] [testng] 13:01:35,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dfffc8d - End of configuration. [testng] [2024-10-18 13:01:35,529] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2: [testng] 13:01:35,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:01:35,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:35,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_13-01-35.log] [testng] 13:01:35,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e0c9f2e - End of configuration. [testng] [2024-10-18 13:01:36,007] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] 13:01:36,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:01:36,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:36,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_13-01-36.log] [testng] 13:01:36,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b238959 - End of configuration. [testng] [2024-10-18 13:01:37,493] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2: [testng] 13:01:37,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:01:37,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:37,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_13-01-37.log] [testng] 13:01:37,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef7046e - End of configuration. [testng] [2024-10-18 13:01:38,224] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 13:01:38,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:01:38,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:38,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_13-01-38.log] [testng] 13:01:38,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c1374cc - End of configuration. [testng] [2024-10-18 13:01:44,151] [pool-1-thread-7] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-10-18 13:01:45,225] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-10-18 13:01:46,047] [pool-1-thread-12] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-10-18 13:01:47,177] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-10-18 13:01:47,681] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-10-18 13:01:48,173] [pool-1-thread-8] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-10-18 13:01:49,257] [pool-1-thread-4] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-10-18 13:01:50,429] [pool-1-thread-2] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-10-18 13:01:53,207] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-10-18 13:01:55,304] [pool-1-thread-5] Initializing /data/kraig/head.jp2: [testng] [2024-10-18 13:01:56,119] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-10-18 13:01:59,714] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-10-18 13:02:03,545] [pool-1-thread-1] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-10-18 13:02:04,817] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-10-18 13:02:05,471] [pool-1-thread-5] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-10-18 13:02:10,154] [pool-1-thread-2] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-10-18 13:02:11,167] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-10-18 13:02:13,319] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 20 seconds Finished: SUCCESS