Started by upstream project "BIOFORMATS-test-repo" build number 27 originally caused by: Started by upstream project "Trigger" build number 30 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins6976825662846658621.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_3572_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:52:52,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:52:52,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:52:52,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:52:52,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:52:52,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:52:52,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:52:52,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:52:52,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:52:52,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:52:52,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:52:52,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:52:52,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:52:53,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:52:53,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:52:53,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:52:53,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:52:53,111 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:52:53,111 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:52:53,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:52:53,112 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:52:53,112 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:52:53,113 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:52:53,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-08 02:52:53,122] [main] java.version = 1.8.0_342 [testng] 02:52:53,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:52:53,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:53,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-08_02-52-53.log] [testng] 02:52:53,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-08 02:52:53,173] [main] testng.directory = /data [testng] [2024-04-08 02:52:53,173] [main] testng.configDirectory = /config [testng] [2024-04-08 02:52:53,185] [main] testng.multiplier = 1.0 [testng] [2024-04-08 02:52:53,185] [main] testng.in-memory = false [testng] [2024-04-08 02:52:53,185] [main] testng.allow-missing = false [testng] [2024-04-08 02:52:53,185] [main] user.language = fr [testng] [2024-04-08 02:52:53,185] [main] user.country = FR [testng] [2024-04-08 02:52:53,185] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-08 02:52:55,844] [main] ---------------------------------------- [testng] [2024-04-08 02:52:55,844] [main] Total files: 31 [testng] [2024-04-08 02:52:55,844] [main] Scan time: 2.659 s (85 ms/file) [testng] [2024-04-08 02:52:55,844] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-08 02:52:58,648] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] 02:52:58,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:52:58,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-08_02-52-58.log] [testng] 02:52:58,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25a86466 - End of configuration. [testng] [2024-04-08 02:52:58,690] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2: [testng] 02:52:58,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:52:58,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-08_02-52-58.log] [testng] 02:52:58,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c0b110 - End of configuration. [testng] [2024-04-08 02:52:58,715] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 02:52:58,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:52:58,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-08_02-52-58.log] [testng] 02:52:58,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a0569d - End of configuration. [testng] [2024-04-08 02:52:58,831] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx: [testng] 02:52:58,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:52:58,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-08_02-52-58.log] [testng] 02:52:58,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75021bf2 - End of configuration. [testng] [2024-04-08 02:52:58,882] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] 02:52:58,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:52:58,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-08_02-52-58.log] [testng] 02:52:58,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@341e4376 - End of configuration. [testng] [2024-04-08 02:52:58,936] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] 02:52:58,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:52:58,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-08_02-52-58.log] [testng] 02:52:58,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37811d0f - End of configuration. [testng] [2024-04-08 02:52:58,963] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg: [testng] 02:52:58,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:52:58,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:58,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-08_02-52-58.log] [testng] 02:52:58,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1174f8dd - End of configuration. [testng] [2024-04-08 02:52:59,002] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] 02:52:59,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:52:59,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-08_02-52-59.log] [testng] 02:52:59,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f71ae16 - End of configuration. [testng] [2024-04-08 02:52:59,017] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2: [testng] 02:52:59,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:52:59,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-08_02-52-59.log] [testng] 02:52:59,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f8a45ac - End of configuration. [testng] [2024-04-08 02:52:59,030] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] 02:52:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:52:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-08_02-52-59.log] [testng] 02:52:59,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68bb9f81 - End of configuration. [testng] [2024-04-08 02:52:59,060] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2: [testng] 02:52:59,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:52:59,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-08_02-52-59.log] [testng] 02:52:59,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e799487 - End of configuration. [testng] [2024-04-08 02:52:59,097] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 02:52:59,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:52:59,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:59,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-08_02-52-59.log] [testng] 02:52:59,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e39d3b1 - End of configuration. [testng] [2024-04-08 02:53:00,433] [pool-1-thread-4] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-04-08 02:53:00,874] [pool-1-thread-7] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-04-08 02:53:00,950] [pool-1-thread-5] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-04-08 02:53:01,346] [pool-1-thread-1] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-04-08 02:53:01,389] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-04-08 02:53:02,021] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-04-08 02:53:02,033] [pool-1-thread-12] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-04-08 02:53:02,342] [pool-1-thread-3] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-04-08 02:53:02,664] [pool-1-thread-7] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-04-08 02:53:02,897] [pool-1-thread-8] Initializing /data/kraig/head.jp2: [testng] [2024-04-08 02:53:04,721] [pool-1-thread-8] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-04-08 02:53:05,730] [pool-1-thread-8] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-04-08 02:53:07,589] [pool-1-thread-10] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-04-08 02:53:13,015] [pool-1-thread-2] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-04-08 02:53:13,829] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-04-08 02:53:13,928] [pool-1-thread-11] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-04-08 02:53:16,515] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-04-08 02:53:17,073] [pool-1-thread-6] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 48 seconds Finished: SUCCESS