Started by upstream project "BIOFORMATS-test-repo" build number 228
originally caused by:
Started by upstream project "Trigger" build number 253
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1756088717224829049.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35758_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:50:03,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:50:03,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:50:03,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:50:03,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:50:03,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:50:03,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:50:03,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:50:03,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:50:03,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:50:03,274 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:50:03,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:50:03,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:50:03,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:50:03,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:50:03,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:50:03,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:50:03,482 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:50:03,482 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:50:03,482 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:50:03,483 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:50:03,483 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:50:03,483 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:50:03,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-19 01:50:03,492] [main] java.version = 11.0.16
[testng] 01:50:03,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:50:03,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:03,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-19_01-50-03.log]
[testng] 01:50:03,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-19 01:50:03,541] [main] testng.directory = /data
[testng] [2024-10-19 01:50:03,541] [main] testng.configDirectory = /config
[testng] [2024-10-19 01:50:03,551] [main] testng.multiplier = 1.0
[testng] [2024-10-19 01:50:03,553] [main] testng.in-memory = false
[testng] [2024-10-19 01:50:03,553] [main] testng.allow-missing = false
[testng] [2024-10-19 01:50:03,553] [main] user.language = en
[testng] [2024-10-19 01:50:03,553] [main] user.country = ${user.country}
[testng] [2024-10-19 01:50:03,553] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-19 01:50:04,113] [main] ----------------------------------------
[testng] [2024-10-19 01:50:04,113] [main] Total files: 25
[testng] [2024-10-19 01:50:04,113] [main] Scan time: 0.56 s (22 ms/file)
[testng] [2024-10-19 01:50:04,114] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-19 01:50:06,655] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT:
[testng] 01:50:06,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:50:06,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-19_01-50-06.log]
[testng] 01:50:06,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f33600c - End of configuration.
[testng] [2024-10-19 01:50:06,718] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:50:06,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:50:06,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-19_01-50-06.log]
[testng] 01:50:06,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd01605 - End of configuration.
[testng] [2024-10-19 01:50:06,766] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT:
[testng] 01:50:06,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:50:06,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-19_01-50-06.log]
[testng] 01:50:06,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fbd922 - End of configuration.
[testng] [2024-10-19 01:50:06,836] [pool-1-thread-10] Initializing /data/misc/swlogo.pict:
[testng] 01:50:06,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:50:06,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-19_01-50-06.log]
[testng] 01:50:06,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b12466c - End of configuration.
[testng] [2024-10-19 01:50:06,884] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 01:50:06,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:50:06,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-19_01-50-06.log]
[testng] 01:50:06,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d44284b - End of configuration.
[testng] [2024-10-19 01:50:06,931] [pool-1-thread-8] Initializing /data/misc/planet.png:
[testng] 01:50:06,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:50:06,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-19_01-50-06.log]
[testng] 01:50:06,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc25ff0 - End of configuration.
[testng] [2024-10-19 01:50:06,939] [pool-1-thread-7] Initializing /data/jqd/sixteenBit.pict:
[testng] 01:50:06,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:50:06,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-19_01-50-06.log]
[testng] 01:50:06,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1dddc9 - End of configuration.
[testng] [2024-10-19 01:50:06,990] [pool-1-thread-6] Initializing /data/jqd/mire32.pict:
[testng] 01:50:06,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:50:06,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:06,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-19_01-50-06.log]
[testng] 01:50:06,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51912cee - End of configuration.
[testng] [2024-10-19 01:50:07,036] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:50:07,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:50:07,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:07,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-19_01-50-07.log]
[testng] 01:50:07,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@760e66e0 - End of configuration.
[testng] [2024-10-19 01:50:07,090] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT:
[testng] 01:50:07,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:50:07,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:07,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-19_01-50-07.log]
[testng] 01:50:07,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b74ca4e - End of configuration.
[testng] [2024-10-19 01:50:07,141] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 01:50:07,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:50:07,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:07,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-19_01-50-07.log]
[testng] 01:50:07,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346a65c0 - End of configuration.
[testng] [2024-10-19 01:50:07,305] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:50:07,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:50:07,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:07,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-19_01-50-07.log]
[testng] 01:50:07,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ec1ca3 - End of configuration.
[testng] [2024-10-19 01:50:09,412] [pool-1-thread-8] Initializing /data/misc/planet2.pict:
[testng] [2024-10-19 01:50:09,454] [pool-1-thread-6] Initializing /data/jqd/32bit.pict:
[testng] [2024-10-19 01:50:09,496] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-10-19 01:50:09,529] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-10-19 01:50:09,560] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-10-19 01:50:09,589] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict:
[testng] [2024-10-19 01:50:09,647] [pool-1-thread-1] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-10-19 01:50:09,682] [pool-1-thread-10] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-10-19 01:50:09,715] [pool-1-thread-11] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-10-19 01:50:09,759] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] [2024-10-19 01:50:10,321] [pool-1-thread-3] Initializing /data/misc/planet.pict:
[testng] [2024-10-19 01:50:10,701] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT:
[testng] [2024-10-19 01:50:10,871] [pool-1-thread-9] Initializing /data/brian/images/VENUS.pct:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS