Started by upstream project "BIOFORMATS-test-repo" build number 228
originally caused by:
Started by upstream project "Trigger" build number 253
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins11851158372310892604.sh
+ '[' cv7000 = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35771_merge_ci -v /uod/idr/repos/curated/cv7000:/data -v /uod/idr-scratch/merge-ci/curated/cv7000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:10:27,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:10:27,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:10:27,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:10:27,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:10:27,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:10:27,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:10:27,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:10:27,856 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:10:27,857 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:10:27,857 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:10:27,858 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:10:27,858 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6340e5f0 - End of configuration.
[testng] 02:10:27,859 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1c7696c6 - Registering current configuration as safe fallback point
[testng] 02:10:27,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60099951 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 412 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-19 02:10:27,875] [main] java.version = 11.0.16
[testng] 02:10:27,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:10:27,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:10:27,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-19_02-10-27.log]
[testng] 02:10:27,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-19 02:10:27,951] [main] testng.directory = /data
[testng] [2024-10-19 02:10:27,952] [main] testng.configDirectory = /config
[testng] [2024-10-19 02:10:27,967] [main] testng.multiplier = 1.0
[testng] [2024-10-19 02:10:27,969] [main] testng.in-memory = false
[testng] [2024-10-19 02:10:27,970] [main] testng.allow-missing = false
[testng] [2024-10-19 02:10:27,970] [main] user.language = en
[testng] [2024-10-19 02:10:27,970] [main] user.country = ${user.country}
[testng] [2024-10-19 02:10:27,970] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-19 02:19:34,388] [main] ----------------------------------------
[testng] [2024-10-19 02:19:34,388] [main] Total files: 31992
[testng] [2024-10-19 02:19:34,389] [main] Scan time: 546.418 s (17 ms/file)
[testng] [2024-10-19 02:19:34,389] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-19 02:22:35,719] [pool-1-thread-1] Initializing /data/samples/multiple-actions-per-channel/test-plate.wpi:
[testng] 02:22:35,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:22:35,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:35,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-19_02-22-35.log]
[testng] 02:22:35,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0bfdb0 - End of configuration.
[testng] [2024-10-19 02:22:38,019] [pool-1-thread-12] Initializing /data/public/idr0088/110000251230/110000251230.wpi:
[testng] 02:22:38,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:22:38,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:38,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-19_02-22-38.log]
[testng] 02:22:38,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e1ba1ff - End of configuration.
[testng] [2024-10-19 02:22:41,093] [pool-1-thread-11] Initializing /data/glencoe/DW 0001_20161111_100649/AssayPlate_Corning_#3683/AssayPlate_Corning_#3683.wpi:
[testng] 02:22:41,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:22:41,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:41,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-19_02-22-41.log]
[testng] 02:22:41,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b752e4 - End of configuration.
[testng] [2024-10-19 02:22:44,353] [pool-1-thread-10] Initializing /data/samples/extra-dirs/AssayPlate_Corning_#3683.wpi:
[testng] 02:22:44,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:22:44,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:44,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-19_02-22-44.log]
[testng] 02:22:44,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46fcde9d - End of configuration.
[testng] [2024-10-19 02:22:45,519] [pool-1-thread-9] Initializing /data/glencoe/DW 0003_20161111_111619/AssayPlate_Corning_#3683/AssayPlate_Corning_#3683.wpi:
[testng] 02:22:45,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:22:45,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:45,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-19_02-22-45.log]
[testng] 02:22:45,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration.
[testng] [2024-10-19 02:22:47,110] [pool-1-thread-8] Initializing /data/glencoe/DW 0002_20161111_105720/AssayPlate_Corning_#3683/AssayPlate_Corning_#3683.wpi:
[testng] 02:22:47,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:22:47,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:47,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-19_02-22-47.log]
[testng] 02:22:47,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8237d7 - End of configuration.
[testng] [2024-10-19 02:22:48,788] [pool-1-thread-7] Initializing /data/samples/sparse-channels/sparse.wpi:
[testng] 02:22:48,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:22:48,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:48,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-19_02-22-48.log]
[testng] 02:22:48,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1528b6d0 - End of configuration.
[testng] [2024-10-19 02:22:50,387] [pool-1-thread-6] Initializing /data/samples/multi-action-z/test-plate.wpi:
[testng] 02:22:50,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:22:50,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:50,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-19_02-22-50.log]
[testng] 02:22:50,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@181c4ffa - End of configuration.
[testng] [2024-10-19 02:22:52,413] [pool-1-thread-5] Initializing /data/public/idr0093/020/020.wpi:
[testng] 02:22:52,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:22:52,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:52,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-19_02-22-52.log]
[testng] 02:22:52,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55f2e1e4 - End of configuration.
[testng] [2024-10-19 02:22:56,570] [pool-1-thread-4] Initializing /data/nih/180521-OMERO-Multi-Test_20180521_134927/Test-plate-1/Test-plate-1.wpi:
[testng] 02:22:56,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:22:56,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:56,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-19_02-22-56.log]
[testng] 02:22:56,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a529831 - End of configuration.
[testng] [2024-10-19 02:22:59,854] [pool-1-thread-3] Initializing /data/samples/separate-image-directory/AssayPlate_Corning_#3683.wpi:
[testng] 02:22:59,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:22:59,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:59,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-19_02-22-59.log]
[testng] 02:22:59,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@336f50fc - End of configuration.
[testng] [2024-10-19 02:23:01,317] [pool-1-thread-2] Initializing /data/samples/channel-subset/AssayPlate_Corning_#3683.wpi:
[testng] 02:23:01,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:23:01,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:01,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-19_02-23-01.log]
[testng] 02:23:01,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48062920 - End of configuration.
[testng] 03:50:06,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:50:06,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:50:06,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-19_03-50-06.log]
[testng] 03:50:06,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37a14aa1 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 99 minutes 44 seconds
Finished: SUCCESS