Started by upstream project "BIOFORMATS-test-repo" build number 228
originally caused by:
 Started by upstream project "Trigger" build number 253
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8753386856788868387.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35863_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 04:59:07,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:59:07,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 04:59:07,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:59:07,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:59:07,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:59:07,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:59:07,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:59:07,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:59:07,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:59:07,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:59:07,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:59:07,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:59:07,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:59:07,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:59:07,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:59:07,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:59:07,805 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:59:07,806 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:59:07,806 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:59:07,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:59:07,807 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 04:59:07,808 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 04:59:07,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-19 04:59:07,821] [main] java.version = 11.0.16
   [testng] 04:59:07,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:59:07,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:07,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-19_04-59-07.log]
   [testng] 04:59:07,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-19 04:59:07,891] [main] testng.directory = /data
   [testng] [2024-10-19 04:59:07,892] [main] testng.configDirectory = /config
   [testng] [2024-10-19 04:59:07,905] [main] testng.multiplier = 1.0
   [testng] [2024-10-19 04:59:07,907] [main] testng.in-memory = false
   [testng] [2024-10-19 04:59:07,908] [main] testng.allow-missing = false
   [testng] [2024-10-19 04:59:07,908] [main] user.language = en
   [testng] [2024-10-19 04:59:07,908] [main] user.country = ${user.country}
   [testng] [2024-10-19 04:59:07,908] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-19 04:59:20,844] [main] ----------------------------------------
   [testng] [2024-10-19 04:59:20,844] [main] Total files: 31
   [testng] [2024-10-19 04:59:20,844] [main] Scan time: 12.936 s (417 ms/file)
   [testng] [2024-10-19 04:59:20,844] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 30 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-19 04:59:37,445] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: 
   [testng] 04:59:37,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:59:37,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:37,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-19_04-59-37.log]
   [testng] 04:59:37,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368fb416 - End of configuration.
   [testng] [2024-10-19 04:59:37,608] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: 
   [testng] 04:59:37,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:59:37,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:37,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-19_04-59-37.log]
   [testng] 04:59:37,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51f1c1fc - End of configuration.
   [testng] [2024-10-19 04:59:38,101] [pool-1-thread-11] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: 
   [testng] 04:59:38,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:59:38,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:38,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-19_04-59-38.log]
   [testng] 04:59:38,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49ce825e - End of configuration.
   [testng] [2024-10-19 04:59:38,511] [pool-1-thread-10] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: 
   [testng] 04:59:38,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:59:38,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:38,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-19_04-59-38.log]
   [testng] 04:59:38,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b6f7fd - End of configuration.
   [testng] [2024-10-19 04:59:38,932] [pool-1-thread-9] Initializing /data/david/C1R1_FOS.jp2: 
   [testng] 04:59:38,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:59:38,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:38,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-19_04-59-38.log]
   [testng] 04:59:38,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@101d7ee9 - End of configuration.
   [testng] [2024-10-19 04:59:39,349] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2: 
   [testng] 04:59:39,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:59:39,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:39,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-19_04-59-39.log]
   [testng] 04:59:39,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57057e71 - End of configuration.
   [testng] [2024-10-19 04:59:39,763] [pool-1-thread-7] Initializing /data/vikram/Captured 2.jp2: 
   [testng] 04:59:39,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:59:39,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:39,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-19_04-59-39.log]
   [testng] 04:59:39,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75f9b8a5 - End of configuration.
   [testng] [2024-10-19 04:59:40,298] [pool-1-thread-6] Initializing /data/venu/Multichannel 3.jp2: 
   [testng] 04:59:40,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:59:40,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:40,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-19_04-59-40.log]
   [testng] 04:59:40,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36b18b0c - End of configuration.
   [testng] [2024-10-19 04:59:40,791] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: 
   [testng] 04:59:40,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:59:40,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:40,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-19_04-59-40.log]
   [testng] 04:59:40,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3685d855 - End of configuration.
   [testng] [2024-10-19 04:59:41,205] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jpc: 
   [testng] 04:59:41,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:59:41,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:41,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-19_04-59-41.log]
   [testng] 04:59:41,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e1237d - End of configuration.
   [testng] [2024-10-19 04:59:41,589] [pool-1-thread-3] Initializing /data/frans/flower.jp2: 
   [testng] 04:59:41,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:59:41,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:41,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-19_04-59-41.log]
   [testng] 04:59:41,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b95483 - End of configuration.
   [testng] [2024-10-19 04:59:41,925] [pool-1-thread-2] Initializing /data/david/000000_000001.jpx: 
   [testng] 04:59:41,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:59:41,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:59:41,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-19_04-59-41.log]
   [testng] 04:59:41,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce06b71 - End of configuration.
   [testng] [2024-10-19 04:59:46,488] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: 
   [testng] [2024-10-19 04:59:47,209] [pool-1-thread-7] Initializing /data/david/multichannel-2d test.jp2: 
   [testng] [2024-10-19 04:59:47,688] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jp2: 
   [testng] [2024-10-19 04:59:48,070] [pool-1-thread-8] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: 
   [testng] [2024-10-19 04:59:51,717] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: 
   [testng] [2024-10-19 04:59:53,628] [pool-1-thread-2] Initializing /data/big-images/4kx4k.jpf: 
   [testng] [2024-10-19 04:59:56,062] [pool-1-thread-1] Initializing /data/david/cy5-tph.jp2: 
   [testng] [2024-10-19 04:59:56,905] [pool-1-thread-6] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: 
   [testng] [2024-10-19 04:59:58,586] [pool-1-thread-12] Initializing /data/david/multichannel-3d-MBF-type.jpx: 
   [testng] [2024-10-19 05:00:00,025] [pool-1-thread-10] Initializing /data/vikram/Captured 4.jp2: 
   [testng] [2024-10-19 05:00:00,500] [pool-1-thread-5] Initializing /data/vikram/Captured 5.jp2: 
   [testng] [2024-10-19 05:00:04,317] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: 
   [testng] [2024-10-19 05:00:05,544] [pool-1-thread-6] Initializing /data/kraig/head.jp2: 
   [testng] [2024-10-19 05:00:06,053] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: 
   [testng] [2024-10-19 05:00:06,983] [pool-1-thread-5] Initializing /data/big-images/8kx8k.jpf: 
   [testng] [2024-10-19 05:00:07,486] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2: 
   [testng] [2024-10-19 05:00:11,615] [pool-1-thread-6] Initializing /data/vikram/Captured 1.jp2: 
   [testng] [2024-10-19 05:00:12,082] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1590, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 7 minutes 5 seconds
Finished: SUCCESS