Started by upstream project "BIOFORMATS-test-repo" build number 229
originally caused by:
Started by upstream project "Trigger" build number 254
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12377623261137817483.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35893_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:25:51,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:25:51,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:25:51,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:51,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:51,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:25:51,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:25:51,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:25:51,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:51,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:51,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:25:51,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:25:51,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:25:51,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:25:51,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:25:51,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:25:51,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:25:51,584 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:25:51,584 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:25:51,584 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:25:51,584 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:25:51,585 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:25:51,586 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:25:51,586 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-20 01:25:51,596] [main] java.version = 17.0.2
[testng] 01:25:51,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:25:51,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:51,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_01-25-51.log]
[testng] 01:25:51,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-20 01:25:51,646] [main] testng.directory = /data
[testng] [2024-10-20 01:25:51,646] [main] testng.configDirectory = /config
[testng] [2024-10-20 01:25:51,655] [main] testng.multiplier = 1.0
[testng] [2024-10-20 01:25:51,656] [main] testng.in-memory = false
[testng] [2024-10-20 01:25:51,656] [main] testng.allow-missing = false
[testng] [2024-10-20 01:25:51,656] [main] user.language = en
[testng] [2024-10-20 01:25:51,657] [main] user.country = ${user.country}
[testng] [2024-10-20 01:25:51,657] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-20 01:25:52,222] [main] ----------------------------------------
[testng] [2024-10-20 01:25:52,222] [main] Total files: 22
[testng] [2024-10-20 01:25:52,222] [main] Scan time: 0.565 s (25 ms/file)
[testng] [2024-10-20 01:25:52,222] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-20 01:27:35,091] [pool-1-thread-1] Initializing /data/imagej/fat-cells.zip:
[testng] 01:27:35,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:27:35,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:35,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_01-27-35.log]
[testng] 01:27:35,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13f0c42c - End of configuration.
[testng] [2024-10-20 01:27:39,681] [pool-1-thread-12] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 01:27:39,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:27:39,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:39,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_01-27-39.log]
[testng] 01:27:39,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e61c4b - End of configuration.
[testng] [2024-10-20 01:27:43,027] [pool-1-thread-11] Initializing /data/imagej/3D_Chromosome.zip:
[testng] 01:27:43,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:27:43,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:43,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_01-27-43.log]
[testng] 01:27:43,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fdc1a62 - End of configuration.
[testng] [2024-10-20 01:27:45,477] [pool-1-thread-10] Initializing /data/imagej/xrays.zip:
[testng] 01:27:45,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:27:45,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:45,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_01-27-45.log]
[testng] 01:27:45,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511e2292 - End of configuration.
[testng] [2024-10-20 01:27:47,197] [pool-1-thread-9] Initializing /data/imagej/flybrain.zip:
[testng] 01:27:47,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:27:47,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:47,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_01-27-47.log]
[testng] 01:27:47,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f690185 - End of configuration.
[testng] [2024-10-20 01:27:55,516] [pool-1-thread-8] Initializing /data/imagej/m51.zip:
[testng] 01:27:55,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:27:55,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:55,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_01-27-55.log]
[testng] 01:27:55,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca9e1b7 - End of configuration.
[testng] [2024-10-20 01:27:56,983] [pool-1-thread-7] Initializing /data/imagej/se3.zip:
[testng] 01:27:56,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:27:56,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:56,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_01-27-56.log]
[testng] 01:27:56,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f85131 - End of configuration.
[testng] [2024-10-20 01:28:06,626] [pool-1-thread-6] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 01:28:06,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:28:06,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_01-28-06.log]
[testng] 01:28:06,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12dc94da - End of configuration.
[testng] [2024-10-20 01:28:08,938] [pool-1-thread-5] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] 01:28:08,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:28:08,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:08,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_01-28-08.log]
[testng] 01:28:08,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25065365 - End of configuration.
[testng] [2024-10-20 01:28:12,218] [pool-1-thread-4] Initializing /data/imagej/RatBrain.zip:
[testng] 01:28:12,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:28:12,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:12,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_01-28-12.log]
[testng] 01:28:12,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227cee7b - End of configuration.
[testng] [2024-10-20 01:28:14,160] [pool-1-thread-3] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 01:28:14,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:28:14,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:14,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_01-28-14.log]
[testng] 01:28:14,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a31396 - End of configuration.
[testng] [2024-10-20 01:28:22,336] [pool-1-thread-2] Initializing /data/imagej/hela-cells.zip:
[testng] 01:28:22,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:28:22,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:22,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_01-28-22.log]
[testng] 01:28:22,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b1ea9ec - End of configuration.
[testng] [2024-10-20 01:28:44,168] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip:
[testng] [2024-10-20 01:28:47,550] [pool-1-thread-8] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] [2024-10-20 01:28:56,244] [pool-1-thread-4] Initializing /data/imagej/confocal-stack.zip:
[testng] [2024-10-20 01:29:06,296] [pool-1-thread-6] Initializing /data/imagej/scala-media.zip:
[testng] [2024-10-20 01:29:08,714] [pool-1-thread-11] Initializing /data/samples/sdub.zip:
[testng] [2024-10-20 01:29:20,389] [pool-1-thread-11] Initializing /data/imagej/mri-stack.zip:
[testng] [2024-10-20 01:29:22,963] [pool-1-thread-2] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2024-10-20 01:29:37,519] [pool-1-thread-6] Initializing /data/imagej/watershed-animation.zip:
[testng] [2024-10-20 01:29:39,362] [pool-1-thread-5] Initializing /data/imagej/FluorescentCells.zip:
[testng] [2024-10-20 01:29:45,843] [pool-1-thread-12] Initializing /data/imagej/confocal-series.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 minutes 2 seconds
Finished: SUCCESS