Started by upstream project "BIOFORMATS-test-repo" build number 229
originally caused by:
Started by upstream project "Trigger" build number 254
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins18192367407528430032.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35909_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:35:55,138 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:35:55,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:35:55,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:55,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:55,141 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:35:55,141 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:35:55,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:35:55,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:55,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:55,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:35:55,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:35:55,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:35:55,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:35:55,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:35:55,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:35:55,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:35:55,337 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:35:55,337 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:35:55,337 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:35:55,338 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:35:55,338 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:35:55,339 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:35:55,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-20 01:35:55,348] [main] java.version = 17.0.2
[testng] 01:35:55,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:35:55,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:55,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_01-35-55.log]
[testng] 01:35:55,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-20 01:35:55,401] [main] testng.directory = /data
[testng] [2024-10-20 01:35:55,401] [main] testng.configDirectory = /config
[testng] [2024-10-20 01:35:55,410] [main] testng.multiplier = 1.0
[testng] [2024-10-20 01:35:55,410] [main] testng.in-memory = false
[testng] [2024-10-20 01:35:55,410] [main] testng.allow-missing = false
[testng] [2024-10-20 01:35:55,411] [main] user.language = en
[testng] [2024-10-20 01:35:55,411] [main] user.country = ${user.country}
[testng] [2024-10-20 01:35:55,411] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-20 01:35:55,830] [main] ----------------------------------------
[testng] [2024-10-20 01:35:55,830] [main] Total files: 21
[testng] [2024-10-20 01:35:55,830] [main] Scan time: 0.419 s (19 ms/file)
[testng] [2024-10-20 01:35:55,830] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-20 01:36:01,469] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA:
[testng] 01:36:01,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:36:01,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:01,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_01-36-01.log]
[testng] 01:36:01,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1455294e - End of configuration.
[testng] [2024-10-20 01:36:01,776] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:36:01,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:36:01,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:01,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_01-36-01.log]
[testng] 01:36:01,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249c208d - End of configuration.
[testng] [2024-10-20 01:36:02,094] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA:
[testng] 01:36:02,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:36:02,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:02,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_01-36-02.log]
[testng] 01:36:02,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a776ee2 - End of configuration.
[testng] [2024-10-20 01:36:02,308] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] 01:36:02,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:36:02,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:02,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_01-36-02.log]
[testng] 01:36:02,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b790ac5 - End of configuration.
[testng] [2024-10-20 01:36:02,488] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA:
[testng] 01:36:02,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:36:02,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:02,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_01-36-02.log]
[testng] 01:36:02,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@220a3cb6 - End of configuration.
[testng] [2024-10-20 01:36:02,656] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA:
[testng] 01:36:02,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:36:02,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:02,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_01-36-02.log]
[testng] 01:36:02,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655bcc9 - End of configuration.
[testng] [2024-10-20 01:36:02,859] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA:
[testng] 01:36:02,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:36:02,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:02,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_01-36-02.log]
[testng] 01:36:02,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1814d4a5 - End of configuration.
[testng] [2024-10-20 01:36:03,069] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA:
[testng] 01:36:03,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:36:03,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:03,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_01-36-03.log]
[testng] 01:36:03,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@312b0422 - End of configuration.
[testng] [2024-10-20 01:36:03,235] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA:
[testng] 01:36:03,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:36:03,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:03,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_01-36-03.log]
[testng] 01:36:03,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289eed7 - End of configuration.
[testng] [2024-10-20 01:36:03,403] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA:
[testng] 01:36:03,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:36:03,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:03,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_01-36-03.log]
[testng] 01:36:03,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a38dfd9 - End of configuration.
[testng] [2024-10-20 01:36:03,581] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA:
[testng] 01:36:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:36:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:03,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_01-36-03.log]
[testng] 01:36:03,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration.
[testng] [2024-10-20 01:36:03,758] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA:
[testng] 01:36:03,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:36:03,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:03,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_01-36-03.log]
[testng] 01:36:03,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69683f83 - End of configuration.
[testng] [2024-10-20 01:36:06,998] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA:
[testng] [2024-10-20 01:36:07,153] [pool-1-thread-3] Initializing /data/samples/CTC16.TGA:
[testng] [2024-10-20 01:36:07,358] [pool-1-thread-9] Initializing /data/samples/FLAG_B24.TGA:
[testng] [2024-10-20 01:36:07,550] [pool-1-thread-12] Initializing /data/samples/FLAG_B16.TGA:
[testng] [2024-10-20 01:36:07,734] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA:
[testng] [2024-10-20 01:36:07,909] [pool-1-thread-11] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-10-20 01:36:08,067] [pool-1-thread-10] Initializing /data/samples/MARBLES.TGA:
[testng] [2024-10-20 01:36:08,233] [pool-1-thread-4] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-10-20 01:36:08,414] [pool-1-thread-8] Initializing /data/samples/XING_B16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 18 seconds
Finished: SUCCESS