Started by upstream project "BIOFORMATS-test-repo" build number 229
originally caused by:
 Started by upstream project "Trigger" build number 254
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1408925084962509950.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_35938_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:10:29,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:10:29,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 02:10:29,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:10:29,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:10:29,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:10:29,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:10:29,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:10:29,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:10:29,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:10:29,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:10:29,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:10:29,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:10:29,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:10:29,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:10:29,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:10:29,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:10:29,383 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:10:29,383 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:10:29,383 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:10:29,384 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:10:29,384 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 02:10:29,384 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 02:10:29,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-20 02:10:29,394] [main] java.version = 17.0.2
   [testng] 02:10:29,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:10:29,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:29,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_02-10-29.log]
   [testng] 02:10:29,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-20 02:10:29,443] [main] testng.directory = /data
   [testng] [2024-10-20 02:10:29,443] [main] testng.configDirectory = /config
   [testng] [2024-10-20 02:10:29,451] [main] testng.multiplier = 1.0
   [testng] [2024-10-20 02:10:29,452] [main] testng.in-memory = false
   [testng] [2024-10-20 02:10:29,452] [main] testng.allow-missing = false
   [testng] [2024-10-20 02:10:29,452] [main] user.language = en
   [testng] [2024-10-20 02:10:29,452] [main] user.country = ${user.country}
   [testng] [2024-10-20 02:10:29,452] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-20 02:10:37,184] [main] ----------------------------------------
   [testng] [2024-10-20 02:10:37,184] [main] Total files: 25
   [testng] [2024-10-20 02:10:37,184] [main] Scan time: 7.731 s (309 ms/file)
   [testng] [2024-10-20 02:10:37,185] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-20 02:10:45,981] [pool-1-thread-1] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] 02:10:45,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:10:45,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:45,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_02-10-45.log]
   [testng] 02:10:45,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1730d74c - End of configuration.
   [testng] [2024-10-20 02:10:46,163] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] 02:10:46,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:10:46,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_02-10-46.log]
   [testng] 02:10:46,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55cfa29 - End of configuration.
   [testng] [2024-10-20 02:10:46,192] [pool-1-thread-11] Initializing /data/pang/unproc-auto: 
   [testng] 02:10:46,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:10:46,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_02-10-46.log]
   [testng] 02:10:46,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7636b0a7 - End of configuration.
   [testng] [2024-10-20 02:10:46,354] [pool-1-thread-10] Initializing /data/imagic/13008.dm2: 
   [testng] 02:10:46,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:10:46,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_02-10-46.log]
   [testng] 02:10:46,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@558d77fb - End of configuration.
   [testng] [2024-10-20 02:10:46,493] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] 02:10:46,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:10:46,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_02-10-46.log]
   [testng] 02:10:46,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620915d5 - End of configuration.
   [testng] [2024-10-20 02:10:46,532] [pool-1-thread-8] Initializing /data/pang/10500x-o4: 
   [testng] 02:10:46,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:10:46,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_02-10-46.log]
   [testng] 02:10:46,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@596db2ba - End of configuration.
   [testng] [2024-10-20 02:10:46,702] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 02:10:46,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:10:46,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_02-10-46.log]
   [testng] 02:10:46,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26469cc2 - End of configuration.
   [testng] [2024-10-20 02:10:46,738] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2: 
   [testng] 02:10:46,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:10:46,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_02-10-46.log]
   [testng] 02:10:46,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ad89ef - End of configuration.
   [testng] [2024-10-20 02:10:46,896] [pool-1-thread-5] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 02:10:46,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:10:46,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:46,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_02-10-46.log]
   [testng] 02:10:46,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b0fa79 - End of configuration.
   [testng] [2024-10-20 02:10:47,036] [pool-1-thread-4] Initializing /data/pang/grating025k.dm2: 
   [testng] 02:10:47,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:10:47,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:47,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_02-10-47.log]
   [testng] 02:10:47,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e2ac77 - End of configuration.
   [testng] [2024-10-20 02:10:47,169] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] 02:10:47,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:10:47,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:47,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_02-10-47.log]
   [testng] 02:10:47,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77863339 - End of configuration.
   [testng] [2024-10-20 02:10:47,295] [pool-1-thread-2] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] 02:10:47,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:10:47,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:10:47,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_02-10-47.log]
   [testng] 02:10:47,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63156615 - End of configuration.
   [testng] [2024-10-20 02:10:49,415] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] [2024-10-20 02:10:49,447] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] [2024-10-20 02:10:49,596] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] [2024-10-20 02:10:49,620] [pool-1-thread-3] Initializing /data/pang/signed: 
   [testng] [2024-10-20 02:10:49,845] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] [2024-10-20 02:10:50,033] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS