Started by upstream project "BIOFORMATS-test-repo" build number 229 originally caused by: Started by upstream project "Trigger" build number 254 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins18214880999797333430.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36000_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:54:51,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:54:51,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:54:51,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:54:51,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:54:51,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:54:51,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:54:51,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:54:51,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:54:51,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:54:51,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:54:51,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:54:51,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:54:51,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:54:51,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:54:51,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:54:51,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:54:51,205 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:54:51,205 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:54:51,205 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:54:51,206 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:54:51,206 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:54:51,207 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:54:51,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-20 03:54:51,216] [main] java.version = 17.0.2 [testng] 03:54:51,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:54:51,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:51,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_03-54-51.log] [testng] 03:54:51,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-20 03:54:51,265] [main] testng.directory = /data [testng] [2024-10-20 03:54:51,265] [main] testng.configDirectory = /config [testng] [2024-10-20 03:54:51,273] [main] testng.multiplier = 1.0 [testng] [2024-10-20 03:54:51,274] [main] testng.in-memory = false [testng] [2024-10-20 03:54:51,274] [main] testng.allow-missing = false [testng] [2024-10-20 03:54:51,274] [main] user.language = en [testng] [2024-10-20 03:54:51,274] [main] user.country = ${user.country} [testng] [2024-10-20 03:54:51,275] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-20 03:55:54,833] [main] ---------------------------------------- [testng] [2024-10-20 03:55:54,833] [main] Total files: 15735 [testng] [2024-10-20 03:55:54,833] [main] Scan time: 63.558 s (4 ms/file) [testng] [2024-10-20 03:55:54,833] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-20 03:56:59,605] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:56:59,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:56:59,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:59,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_03-56-59.log] [testng] 03:56:59,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77529c36 - End of configuration. [testng] [2024-10-20 03:57:00,075] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 03:57:00,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:57:00,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:00,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_03-57-00.log] [testng] 03:57:00,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c541f0e - End of configuration. [testng] [2024-10-20 03:57:00,845] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 03:57:00,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:57:00,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:00,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_03-57-00.log] [testng] 03:57:00,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6fbe72 - End of configuration. [testng] [2024-10-20 03:57:01,263] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:57:01,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:57:01,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:01,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_03-57-01.log] [testng] 03:57:01,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bbe5c - End of configuration. [testng] [2024-10-20 03:57:02,623] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:57:02,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:57:02,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:02,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_03-57-02.log] [testng] 03:57:02,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31afbe7a - End of configuration. [testng] [2024-10-20 03:57:03,330] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 03:57:03,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:57:03,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:03,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_03-57-03.log] [testng] 03:57:03,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@679f858e - End of configuration. [testng] [2024-10-20 03:57:04,126] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:57:04,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:57:04,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:04,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_03-57-04.log] [testng] 03:57:04,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a0c609 - End of configuration. [testng] [2024-10-20 03:57:04,732] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 03:57:04,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:57:04,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:04,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_03-57-04.log] [testng] 03:57:04,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1661ae02 - End of configuration. [testng] [2024-10-20 03:57:05,343] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:57:05,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:57:05,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:05,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_03-57-05.log] [testng] 03:57:05,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration. [testng] [2024-10-20 03:57:05,919] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 03:57:05,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:57:05,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:05,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_03-57-05.log] [testng] 03:57:05,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16463d5c - End of configuration. [testng] [2024-10-20 03:57:06,427] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 03:57:06,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:57:06,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:06,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_03-57-06.log] [testng] 03:57:06,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@481ad476 - End of configuration. [testng] [2024-10-20 03:57:06,905] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 03:57:06,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:57:06,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:06,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_03-57-06.log] [testng] 03:57:06,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35248130 - End of configuration. [testng] [2024-10-20 03:57:20,793] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-20 03:57:28,301] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-10-20 03:57:29,456] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-20 03:57:47,967] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-20 03:59:16,077] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-20 03:59:19,091] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-20 03:59:25,481] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-20 03:59:41,054] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-10-20 04:00:07,559] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-20 04:00:24,117] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-10-20 04:00:26,782] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-20 04:00:35,850] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-20 04:00:43,558] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-20 04:00:58,807] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-20 04:01:08,297] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-20 04:01:18,925] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-20 04:01:21,206] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-20 04:01:24,810] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-20 04:01:32,712] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-20 04:01:34,304] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-20 04:01:49,124] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-20 04:01:58,259] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-20 04:02:03,984] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-20 04:02:08,503] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-20 04:02:28,137] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-20 04:02:29,724] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-20 04:02:38,100] [pool-1-thread-8] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-20 04:02:44,979] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-20 04:02:47,198] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-20 04:03:06,648] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-20 04:03:21,263] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-20 04:03:38,184] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-20 04:03:51,240] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-20 04:03:54,187] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-20 04:04:05,820] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-20 04:05:43,590] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-20 04:06:25,199] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-20 04:06:56,655] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-20 04:07:21,030] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-20 04:07:23,995] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-20 04:07:53,761] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-20 04:08:06,412] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-20 04:08:36,294] [pool-1-thread-11] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-20 04:08:45,663] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-20 04:09:01,010] [pool-1-thread-11] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-20 04:10:40,138] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-20 04:12:07,192] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-20 04:14:41,602] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-20 04:15:13,972] [pool-1-thread-10] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-20 04:15:19,020] [pool-1-thread-9] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-20 04:15:52,274] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-20 04:16:12,773] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-20 04:20:12,309] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-20 04:20:40,383] [pool-1-thread-3] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-20 04:20:56,680] [pool-1-thread-2] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-20 04:21:02,795] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-20 04:21:37,401] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-20 04:22:59,179] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-20 04:23:24,893] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-20 04:23:30,966] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-20 04:23:59,913] [pool-1-thread-10] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-20 04:24:01,919] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-20 04:25:49,660] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-20 04:26:55,713] [pool-1-thread-5] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-20 04:27:10,385] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-20 04:27:19,488] [pool-1-thread-10] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-20 04:27:35,354] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-20 04:27:58,586] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-20 04:28:23,706] [pool-1-thread-4] Initializing /data/converted/michel/c.tif: [testng] [2024-10-20 04:28:25,612] [pool-1-thread-6] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-20 04:28:47,222] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-20 04:28:58,307] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-20 04:29:08,338] [pool-1-thread-4] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-20 04:29:27,925] [pool-1-thread-6] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-20 04:31:08,258] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-20 04:31:33,271] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-20 04:31:57,605] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-20 04:32:51,352] [pool-1-thread-2] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-20 04:33:50,272] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-20 04:35:01,662] [pool-1-thread-11] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-20 04:36:40,381] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-20 04:37:21,943] [pool-1-thread-3] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-20 04:37:27,048] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-20 04:38:12,634] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-20 04:38:58,281] [pool-1-thread-7] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-20 04:39:09,080] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-20 04:39:10,642] [pool-1-thread-3] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-20 04:39:24,192] [pool-1-thread-6] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-20 04:39:33,624] [pool-1-thread-7] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-20 04:39:50,971] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-20 04:39:55,578] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-20 04:40:00,520] [pool-1-thread-7] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-20 04:40:22,061] [pool-1-thread-6] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-20 04:40:23,867] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-20 04:40:26,981] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-20 04:41:07,862] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-20 04:41:27,887] [pool-1-thread-1] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-20 04:41:32,555] [pool-1-thread-2] Initializing /data/converted/michel/d.tif: [testng] [2024-10-20 04:41:41,131] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-20 04:42:00,032] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-20 04:42:05,981] [pool-1-thread-12] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-20 04:42:20,179] [pool-1-thread-3] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-20 04:42:21,840] [pool-1-thread-2] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-20 04:42:31,867] [pool-1-thread-12] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-20 04:42:55,481] [pool-1-thread-12] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-20 04:43:00,943] [pool-1-thread-2] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-20 04:43:12,970] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-20 04:43:20,330] [pool-1-thread-12] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-20 04:43:32,415] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-20 04:43:42,495] [pool-1-thread-12] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-20 04:43:51,493] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-20 04:43:58,726] [pool-1-thread-11] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-20 04:44:01,295] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 05:19:14,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:19:14,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:14,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_05-19-14.log] [testng] 05:19:14,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fc5625 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 84 minutes 29 seconds Finished: SUCCESS