Started by upstream project "BIOFORMATS-test-repo" build number 230 originally caused by: Started by upstream project "Trigger" build number 255 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11172410174421041813.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_36126_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:54:23,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:54:23,029 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:54:23,029 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:54:23,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:54:23,030 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:54:23,030 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:54:23,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:54:23,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:54:23,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:54:23,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:54:23,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:54:23,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:54:23,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:54:23,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:54:23,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:54:23,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:54:23,305 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:54:23,306 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:54:23,306 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:54:23,306 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:54:23,306 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:54:23,307 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:54:23,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-21 02:54:23,317] [main] java.version = 1.8.0_342 [testng] 02:54:23,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:54:23,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:23,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-21_02-54-23.log] [testng] 02:54:23,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-21 02:54:23,383] [main] testng.directory = /data [testng] [2024-10-21 02:54:23,383] [main] testng.configDirectory = /config [testng] [2024-10-21 02:54:23,396] [main] testng.multiplier = 1.0 [testng] [2024-10-21 02:54:23,396] [main] testng.in-memory = false [testng] [2024-10-21 02:54:23,396] [main] testng.allow-missing = false [testng] [2024-10-21 02:54:23,396] [main] user.language = fr [testng] [2024-10-21 02:54:23,397] [main] user.country = FR [testng] [2024-10-21 02:54:23,397] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-21 02:54:39,289] [main] ---------------------------------------- [testng] [2024-10-21 02:54:39,289] [main] Total files: 19 [testng] [2024-10-21 02:54:39,289] [main] Scan time: 15.892 s (836 ms/file) [testng] [2024-10-21 02:54:39,289] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-21 02:54:51,669] [pool-1-thread-1] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 02:54:51,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:54:51,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:51,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-21_02-54-51.log] [testng] 02:54:51,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@720ad827 - End of configuration. [testng] [2024-10-21 02:54:52,272] [pool-1-thread-12] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 02:54:52,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:54:52,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:52,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-21_02-54-52.log] [testng] 02:54:52,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cdae4d3 - End of configuration. [testng] [2024-10-21 02:54:52,860] [pool-1-thread-11] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 02:54:52,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:54:52,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:52,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-21_02-54-52.log] [testng] 02:54:52,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d0feee - End of configuration. [testng] [2024-10-21 02:54:53,433] [pool-1-thread-10] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 02:54:53,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:54:53,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:53,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-21_02-54-53.log] [testng] 02:54:53,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bd3a4c3 - End of configuration. [testng] [2024-10-21 02:54:54,049] [pool-1-thread-9] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 02:54:54,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:54:54,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-21_02-54-54.log] [testng] 02:54:54,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@562e0bad - End of configuration. [testng] [2024-10-21 02:54:54,633] [pool-1-thread-8] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 02:54:54,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:54:54,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-21_02-54-54.log] [testng] 02:54:54,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656a21b5 - End of configuration. [testng] [2024-10-21 02:54:55,183] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 02:54:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:54:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:55,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-21_02-54-55.log] [testng] 02:54:55,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e92bb5 - End of configuration. [testng] [2024-10-21 02:54:55,758] [pool-1-thread-6] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 02:54:55,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:54:55,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:55,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-21_02-54-55.log] [testng] 02:54:55,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fbbd940 - End of configuration. [testng] [2024-10-21 02:54:56,342] [pool-1-thread-5] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 02:54:56,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:54:56,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:56,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-21_02-54-56.log] [testng] 02:54:56,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@491d2225 - End of configuration. [testng] [2024-10-21 02:54:56,950] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 02:54:56,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:54:56,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:56,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-21_02-54-56.log] [testng] 02:54:56,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@380ddaa1 - End of configuration. [testng] [2024-10-21 02:54:57,545] [pool-1-thread-3] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 02:54:57,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:54:57,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:57,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-21_02-54-57.log] [testng] 02:54:57,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4536e45 - End of configuration. [testng] [2024-10-21 02:54:58,106] [pool-1-thread-2] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 02:54:58,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:54:58,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:58,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-21_02-54-58.log] [testng] 02:54:58,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@548d063 - End of configuration. [testng] [2024-10-21 02:55:20,100] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2024-10-21 02:55:28,668] [pool-1-thread-8] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] [2024-10-21 02:55:32,366] [pool-1-thread-1] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-10-21 02:55:40,339] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] [2024-10-21 02:55:43,576] [pool-1-thread-3] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] [2024-10-21 02:55:47,864] [pool-1-thread-8] Initializing /data/todd/movement-1.htm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 36 seconds Finished: SUCCESS