Started by upstream project "BIOFORMATS-test-repo" build number 231
originally caused by:
Started by upstream project "Trigger" build number 256
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12427794209934947243.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36224_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:31:51,587 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:31:51,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:31:51,588 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:31:51,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:31:51,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:31:51,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:31:51,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:31:51,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:31:51,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:31:51,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:31:51,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:31:51,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:31:51,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:31:51,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:31:51,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:31:51,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:31:51,794 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:31:51,795 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:31:51,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:31:51,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:31:51,795 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:31:51,796 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:31:51,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-22 01:31:51,805] [main] java.version = 11.0.16
[testng] 01:31:51,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:31:51,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:51,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_01-31-51.log]
[testng] 01:31:51,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-22 01:31:51,857] [main] testng.directory = /data
[testng] [2024-10-22 01:31:51,857] [main] testng.configDirectory = /config
[testng] [2024-10-22 01:31:51,867] [main] testng.multiplier = 1.0
[testng] [2024-10-22 01:31:51,868] [main] testng.in-memory = false
[testng] [2024-10-22 01:31:51,868] [main] testng.allow-missing = false
[testng] [2024-10-22 01:31:51,868] [main] user.language = en
[testng] [2024-10-22 01:31:51,868] [main] user.country = ${user.country}
[testng] [2024-10-22 01:31:51,869] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-22 01:31:54,705] [main] ----------------------------------------
[testng] [2024-10-22 01:31:54,706] [main] Total files: 31
[testng] [2024-10-22 01:31:54,706] [main] Scan time: 2.836 s (91 ms/file)
[testng] [2024-10-22 01:31:54,706] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-22 01:31:58,965] [pool-1-thread-1] Initializing /data/big-images/8kx8k.bmp:
[testng] 01:31:58,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:31:58,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:58,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_01-31-58.log]
[testng] 01:31:58,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e3f4eed - End of configuration.
[testng] [2024-10-22 01:31:59,053] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] 01:31:59,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:31:59,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_01-31-59.log]
[testng] 01:31:59,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b44ab50 - End of configuration.
[testng] [2024-10-22 01:31:59,236] [pool-1-thread-11] Initializing /data/stephane/holo0908.bmp:
[testng] 01:31:59,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:31:59,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_01-31-59.log]
[testng] 01:31:59,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c231000 - End of configuration.
[testng] [2024-10-22 01:31:59,321] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] 01:31:59,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:31:59,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_01-31-59.log]
[testng] 01:31:59,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e64b297 - End of configuration.
[testng] [2024-10-22 01:31:59,398] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] 01:31:59,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:31:59,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_01-31-59.log]
[testng] 01:31:59,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7919de0b - End of configuration.
[testng] [2024-10-22 01:31:59,479] [pool-1-thread-8] Initializing /data/curtis/image2.bmp:
[testng] 01:31:59,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:31:59,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_01-31-59.log]
[testng] 01:31:59,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b0a0e8 - End of configuration.
[testng] [2024-10-22 01:31:59,563] [pool-1-thread-7] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] 01:31:59,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:31:59,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_01-31-59.log]
[testng] 01:31:59,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1870b4a8 - End of configuration.
[testng] [2024-10-22 01:31:59,679] [pool-1-thread-6] Initializing /data/ticket-12971/foo.bmp:
[testng] 01:31:59,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:31:59,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_01-31-59.log]
[testng] 01:31:59,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2934c063 - End of configuration.
[testng] [2024-10-22 01:31:59,782] [pool-1-thread-5] Initializing /data/curtis/image3.bmp:
[testng] 01:31:59,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:31:59,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_01-31-59.log]
[testng] 01:31:59,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34aededf - End of configuration.
[testng] [2024-10-22 01:31:59,873] [pool-1-thread-4] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] 01:31:59,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:31:59,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_01-31-59.log]
[testng] 01:31:59,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64fc35e0 - End of configuration.
[testng] [2024-10-22 01:31:59,982] [pool-1-thread-3] Initializing /data/big-images/6kx6k.bmp:
[testng] 01:31:59,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:31:59,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:59,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_01-31-59.log]
[testng] 01:31:59,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f9a78e3 - End of configuration.
[testng] [2024-10-22 01:32:00,149] [pool-1-thread-2] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] 01:32:00,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:32:00,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:00,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_01-32-00.log]
[testng] 01:32:00,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57207e3a - End of configuration.
[testng] [2024-10-22 01:32:03,175] [pool-1-thread-8] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng] [2024-10-22 01:32:03,250] [pool-1-thread-5] Initializing /data/curtis/image1.bmp:
[testng] [2024-10-22 01:32:03,326] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] [2024-10-22 01:32:03,394] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] [2024-10-22 01:32:03,463] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng] [2024-10-22 01:32:03,526] [pool-1-thread-10] Initializing /data/curtis/image4.bmp:
[testng] [2024-10-22 01:32:03,593] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] [2024-10-22 01:32:04,499] [pool-1-thread-4] Initializing /data/curtis/image5.bmp:
[testng] [2024-10-22 01:32:04,785] [pool-1-thread-11] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng] [2024-10-22 01:32:05,655] [pool-1-thread-5] Initializing /data/brian/images/23srp5dksub.bmp:
[testng] [2024-10-22 01:32:05,777] [pool-1-thread-10] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] [2024-10-22 01:32:05,853] [pool-1-thread-9] Initializing /data/brian/images/raw_a.bmp:
[testng] [2024-10-22 01:32:05,927] [pool-1-thread-6] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] [2024-10-22 01:32:06,008] [pool-1-thread-2] Initializing /data/frank/cell_mask_error.bmp:
[testng] [2024-10-22 01:32:06,075] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] [2024-10-22 01:32:06,501] [pool-1-thread-11] Initializing /data/bk/ch_00.bmp:
[testng] [2024-10-22 01:32:06,637] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] [2024-10-22 01:32:07,316] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2024-10-22 01:32:07,440] [pool-1-thread-2] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 36 seconds
Finished: SUCCESS