Started by upstream project "BIOFORMATS-test-repo" build number 231
originally caused by:
Started by upstream project "Trigger" build number 256
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9295585236374439790.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36242_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:52:03,319 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:52:03,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:52:03,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:52:03,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:52:03,323 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:52:03,323 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:52:03,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:52:03,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:52:03,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:52:03,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:52:03,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:52:03,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:52:03,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:52:03,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:52:03,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:52:03,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:52:03,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:52:03,533 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:52:03,533 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:52:03,533 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:52:03,534 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:52:03,534 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:52:03,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-22 01:52:03,543] [main] java.version = 11.0.16
[testng] 01:52:03,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:52:03,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:03,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_01-52-03.log]
[testng] 01:52:03,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-22 01:52:03,592] [main] testng.directory = /data
[testng] [2024-10-22 01:52:03,592] [main] testng.configDirectory = /config
[testng] [2024-10-22 01:52:03,602] [main] testng.multiplier = 1.0
[testng] [2024-10-22 01:52:03,603] [main] testng.in-memory = false
[testng] [2024-10-22 01:52:03,603] [main] testng.allow-missing = false
[testng] [2024-10-22 01:52:03,604] [main] user.language = en
[testng] [2024-10-22 01:52:03,604] [main] user.country = ${user.country}
[testng] [2024-10-22 01:52:03,604] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-22 01:52:05,796] [main] ----------------------------------------
[testng] [2024-10-22 01:52:05,796] [main] Total files: 14
[testng] [2024-10-22 01:52:05,796] [main] Scan time: 2.192 s (156 ms/file)
[testng] [2024-10-22 01:52:05,796] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-22 01:52:35,781] [pool-1-thread-1] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 01:52:35,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:52:35,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:35,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_01-52-35.log]
[testng] 01:52:35,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4325e916 - End of configuration.
[testng] [2024-10-22 01:52:36,486] [pool-1-thread-12] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 01:52:36,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:52:36,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:36,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_01-52-36.log]
[testng] 01:52:36,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@471ff027 - End of configuration.
[testng] [2024-10-22 01:52:37,460] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 01:52:37,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:52:37,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:37,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_01-52-37.log]
[testng] 01:52:37,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b5710c - End of configuration.
[testng] [2024-10-22 01:52:37,770] [pool-1-thread-10] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 01:52:37,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:52:37,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:37,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_01-52-37.log]
[testng] 01:52:37,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8a98e20 - End of configuration.
[testng] [2024-10-22 01:52:40,020] [pool-1-thread-9] Initializing /data/samples/Classic.tif:
[testng] 01:52:40,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:52:40,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:40,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_01-52-40.log]
[testng] 01:52:40,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ea452e3 - End of configuration.
[testng] [2024-10-22 01:52:41,400] [pool-1-thread-8] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 01:52:41,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:52:41,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:41,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_01-52-41.log]
[testng] 01:52:41,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37671b73 - End of configuration.
[testng] [2024-10-22 01:52:41,804] [pool-1-thread-7] Initializing /data/carlsen/Olympics8.tif:
[testng] 01:52:41,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:52:41,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:41,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_01-52-41.log]
[testng] 01:52:41,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f477028 - End of configuration.
[testng] [2024-10-22 01:52:42,115] [pool-1-thread-6] Initializing /data/samples/BigTIFF.tif:
[testng] 01:52:42,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:52:42,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:42,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_01-52-42.log]
[testng] 01:52:42,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1daf1d7 - End of configuration.
[testng] [2024-10-22 01:52:42,394] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 01:52:42,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:52:42,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:42,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_01-52-42.log]
[testng] 01:52:42,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c81262 - End of configuration.
[testng] [2024-10-22 01:52:42,670] [pool-1-thread-4] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 01:52:42,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:52:42,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:42,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_01-52-42.log]
[testng] 01:52:42,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@299832eb - End of configuration.
[testng] [2024-10-22 01:52:42,928] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 01:52:42,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:52:42,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:42,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_01-52-42.log]
[testng] 01:52:42,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3738ca22 - End of configuration.
[testng] [2024-10-22 01:52:43,131] [pool-1-thread-2] Initializing /data/samples/BigTIFFLong.tif:
[testng] 01:52:43,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:52:43,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:52:43,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_01-52-43.log]
[testng] 01:52:43,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67f81af5 - End of configuration.
[testng] [2024-10-22 01:52:50,307] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 2 seconds
Finished: SUCCESS