Started by upstream project "BIOFORMATS-test-repo" build number 231
originally caused by:
Started by upstream project "Trigger" build number 256
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9916773982274607484.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36294_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 03:52:23,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:52:23,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 03:52:23,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:52:23,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:52:23,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:52:23,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:52:23,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:52:23,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:52:23,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:52:23,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:52:23,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:52:23,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:52:23,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:52:23,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:52:23,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:52:23,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:52:23,765 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:52:23,765 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:52:23,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:52:23,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:52:23,766 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 03:52:23,766 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 03:52:23,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-22 03:52:23,775] [main] java.version = 11.0.16
[testng] 03:52:23,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:52:23,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:23,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_03-52-23.log]
[testng] 03:52:23,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-22 03:52:23,825] [main] testng.directory = /data
[testng] [2024-10-22 03:52:23,825] [main] testng.configDirectory = /config
[testng] [2024-10-22 03:52:23,835] [main] testng.multiplier = 1.0
[testng] [2024-10-22 03:52:23,836] [main] testng.in-memory = false
[testng] [2024-10-22 03:52:23,837] [main] testng.allow-missing = false
[testng] [2024-10-22 03:52:23,837] [main] user.language = en
[testng] [2024-10-22 03:52:23,837] [main] user.country = ${user.country}
[testng] [2024-10-22 03:52:23,837] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-22 03:52:24,467] [main] ----------------------------------------
[testng] [2024-10-22 03:52:24,467] [main] Total files: 19
[testng] [2024-10-22 03:52:24,467] [main] Scan time: 0.63 s (33 ms/file)
[testng] [2024-10-22 03:52:24,468] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-22 03:52:29,680] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] 03:52:29,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:52:29,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:29,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_03-52-29.log]
[testng] 03:52:29,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203e1169 - End of configuration.
[testng] [2024-10-22 03:52:29,908] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 03:52:29,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:52:29,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:29,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_03-52-29.log]
[testng] 03:52:29,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee01919 - End of configuration.
[testng] [2024-10-22 03:52:30,139] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 03:52:30,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:52:30,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:30,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_03-52-30.log]
[testng] 03:52:30,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cb6b5f2 - End of configuration.
[testng] [2024-10-22 03:52:30,482] [pool-1-thread-10] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 03:52:30,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:52:30,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:30,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_03-52-30.log]
[testng] 03:52:30,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8fc17 - End of configuration.
[testng] [2024-10-22 03:52:30,762] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW:
[testng] 03:52:30,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:52:30,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:30,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_03-52-30.log]
[testng] 03:52:30,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@116edaea - End of configuration.
[testng] [2024-10-22 03:52:31,013] [pool-1-thread-8] Initializing /data/samples/100R PICT0001.MRW:
[testng] 03:52:31,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:52:31,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:31,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_03-52-31.log]
[testng] 03:52:31,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f00b979 - End of configuration.
[testng] [2024-10-22 03:52:31,235] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 03:52:31,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:52:31,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:31,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_03-52-31.log]
[testng] 03:52:31,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@351e4171 - End of configuration.
[testng] [2024-10-22 03:52:31,463] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 03:52:31,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:52:31,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:31,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_03-52-31.log]
[testng] 03:52:31,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c99b7a - End of configuration.
[testng] [2024-10-22 03:52:31,723] [pool-1-thread-5] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 03:52:31,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:52:31,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:31,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_03-52-31.log]
[testng] 03:52:31,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0e7e31 - End of configuration.
[testng] [2024-10-22 03:52:31,982] [pool-1-thread-4] Initializing /data/samples/200R PICT0002.MRW:
[testng] 03:52:31,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:52:31,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:31,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_03-52-31.log]
[testng] 03:52:31,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4426443 - End of configuration.
[testng] [2024-10-22 03:52:32,286] [pool-1-thread-3] Initializing /data/samples/400R PICT0003.MRW:
[testng] 03:52:32,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:52:32,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:32,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_03-52-32.log]
[testng] 03:52:32,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd8b34 - End of configuration.
[testng] [2024-10-22 03:52:32,506] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 03:52:32,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:52:32,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:52:32,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_03-52-32.log]
[testng] 03:52:32,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4283052f - End of configuration.
[testng] [2024-10-22 03:52:40,731] [pool-1-thread-6] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-10-22 03:52:40,987] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] [2024-10-22 03:52:41,220] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-10-22 03:52:41,596] [pool-1-thread-10] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2024-10-22 03:52:41,833] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-10-22 03:52:42,065] [pool-1-thread-8] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] [2024-10-22 03:52:42,292] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS