Started by upstream project "BIOFORMATS-test-repo" build number 231 originally caused by: Started by upstream project "Trigger" build number 256 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins15877594024199718638.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36328_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 04:36:57,600 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:36:57,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 04:36:57,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:36:57,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:36:57,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:36:57,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:36:57,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:36:57,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:36:57,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:36:57,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:36:57,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:36:57,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:36:57,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:36:57,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:36:57,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:36:57,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:36:57,786 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:36:57,786 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:36:57,786 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:36:57,787 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:36:57,787 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 04:36:57,788 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 04:36:57,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-22 04:36:57,796] [main] java.version = 11.0.16 [testng] 04:36:57,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:36:57,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:57,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_04-36-57.log] [testng] 04:36:57,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-22 04:36:57,841] [main] testng.directory = /data [testng] [2024-10-22 04:36:57,842] [main] testng.configDirectory = /config [testng] [2024-10-22 04:36:57,850] [main] testng.multiplier = 1.0 [testng] [2024-10-22 04:36:57,852] [main] testng.in-memory = false [testng] [2024-10-22 04:36:57,852] [main] testng.allow-missing = false [testng] [2024-10-22 04:36:57,852] [main] user.language = en [testng] [2024-10-22 04:36:57,852] [main] user.country = ${user.country} [testng] [2024-10-22 04:36:57,852] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-22 04:38:13,609] [main] ---------------------------------------- [testng] [2024-10-22 04:38:13,609] [main] Total files: 15735 [testng] [2024-10-22 04:38:13,609] [main] Scan time: 75.757 s (4 ms/file) [testng] [2024-10-22 04:38:13,609] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-22 04:39:42,756] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] 04:39:42,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:39:42,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:42,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_04-39-42.log] [testng] 04:39:42,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bbbd874 - End of configuration. [testng] [2024-10-22 04:39:42,967] [pool-1-thread-12] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] 04:39:42,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:39:42,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:42,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_04-39-42.log] [testng] 04:39:42,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e78b27 - End of configuration. [testng] [2024-10-22 04:39:43,188] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 04:39:43,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:39:43,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:43,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_04-39-43.log] [testng] 04:39:43,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a01686 - End of configuration. [testng] [2024-10-22 04:39:43,434] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] 04:39:43,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:39:43,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:43,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_04-39-43.log] [testng] 04:39:43,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bbc252 - End of configuration. [testng] [2024-10-22 04:39:43,598] [pool-1-thread-9] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] 04:39:43,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:39:43,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:43,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_04-39-43.log] [testng] 04:39:43,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49287e20 - End of configuration. [testng] [2024-10-22 04:39:43,802] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] 04:39:43,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:39:43,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:43,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_04-39-43.log] [testng] 04:39:43,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f27155 - End of configuration. [testng] [2024-10-22 04:39:44,322] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] 04:39:44,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:39:44,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:44,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_04-39-44.log] [testng] 04:39:44,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578ebfbf - End of configuration. [testng] [2024-10-22 04:39:44,583] [pool-1-thread-6] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] 04:39:44,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:39:44,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:44,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_04-39-44.log] [testng] 04:39:44,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55799e93 - End of configuration. [testng] [2024-10-22 04:39:45,002] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] 04:39:45,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:39:45,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:45,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_04-39-45.log] [testng] 04:39:45,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f3dc6ee - End of configuration. [testng] [2024-10-22 04:39:45,540] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] 04:39:45,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:39:45,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:45,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_04-39-45.log] [testng] 04:39:45,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d2e8e08 - End of configuration. [testng] [2024-10-22 04:39:45,858] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] 04:39:45,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:39:45,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:45,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_04-39-45.log] [testng] 04:39:45,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71aa6afd - End of configuration. [testng] [2024-10-22 04:39:46,049] [pool-1-thread-2] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] 04:39:46,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:39:46,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:46,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_04-39-46.log] [testng] 04:39:46,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dcfd499 - End of configuration. [testng] [2024-10-22 04:39:58,184] [pool-1-thread-1] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-22 04:40:01,408] [pool-1-thread-9] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-22 04:40:02,490] [pool-1-thread-10] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-22 04:40:03,469] [pool-1-thread-6] Initializing /data/converted/michel/d.tif: [testng] [2024-10-22 04:40:04,544] [pool-1-thread-3] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-22 04:40:05,411] [pool-1-thread-12] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-22 04:40:22,643] [pool-1-thread-12] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-22 04:40:27,089] [pool-1-thread-3] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-22 04:40:30,881] [pool-1-thread-6] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-22 04:40:42,677] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-22 04:40:49,375] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-22 04:40:50,650] [pool-1-thread-3] Initializing /data/converted/sebastien/test.tif: [testng] [2024-10-22 04:42:08,261] [pool-1-thread-9] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-22 04:42:12,890] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-22 04:42:29,718] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-22 04:42:36,545] [pool-1-thread-9] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-22 04:45:16,613] [pool-1-thread-9] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-22 04:46:02,633] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-22 04:46:04,756] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-22 04:46:35,286] [pool-1-thread-7] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-22 04:46:45,715] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-22 04:46:50,904] [pool-1-thread-1] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-22 04:47:04,441] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-22 04:47:14,982] [pool-1-thread-7] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-22 04:47:46,771] [pool-1-thread-1] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-22 04:48:07,890] [pool-1-thread-6] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-22 04:48:13,917] [pool-1-thread-1] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-22 04:48:40,080] [pool-1-thread-10] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-22 04:49:11,178] [pool-1-thread-6] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-22 04:49:12,797] [pool-1-thread-10] Initializing /data/othmar/mozaic.tif: [testng] [2024-10-22 04:49:17,341] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-22 04:49:19,691] [pool-1-thread-4] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-22 04:49:47,756] [pool-1-thread-4] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-22 04:49:55,937] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-22 04:50:00,642] [pool-1-thread-3] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-22 04:50:42,588] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-22 04:50:52,732] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-10-22 04:51:14,044] [pool-1-thread-11] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-22 04:51:38,900] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-22 04:51:47,331] [pool-1-thread-7] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-22 04:52:20,622] [pool-1-thread-7] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-22 04:53:31,908] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-22 04:53:45,857] [pool-1-thread-10] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-22 04:55:34,832] [pool-1-thread-8] Initializing /data/converted/michel/e.tif: [testng] [2024-10-22 04:56:21,091] [pool-1-thread-7] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-22 04:56:25,487] [pool-1-thread-9] Initializing /data/converted/michel/b.tif: [testng] [2024-10-22 04:56:38,793] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-22 04:57:04,123] [pool-1-thread-9] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-22 04:57:52,702] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-22 04:58:36,648] [pool-1-thread-2] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-22 04:59:21,394] [pool-1-thread-2] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-22 04:59:46,347] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-22 04:59:48,709] [pool-1-thread-6] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-10-22 05:00:33,987] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-22 05:01:30,507] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-22 05:01:39,067] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-22 05:01:50,288] [pool-1-thread-11] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-22 05:03:17,124] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-22 05:03:59,453] [pool-1-thread-7] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-22 05:04:28,116] [pool-1-thread-7] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-22 05:05:03,621] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-22 05:05:07,319] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-22 05:06:45,899] [pool-1-thread-9] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-22 05:09:43,531] [pool-1-thread-2] Initializing /data/converted/michel/a.tif: [testng] [2024-10-22 05:10:05,864] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-22 05:11:04,988] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-22 05:11:22,816] [pool-1-thread-9] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-22 05:11:36,841] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-22 05:11:54,602] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-22 05:11:59,067] [pool-1-thread-12] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-10-22 05:17:10,750] [pool-1-thread-12] Initializing /data/converted/converted/damian.tif: [testng] [2024-10-22 05:17:42,015] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-22 05:18:45,281] [pool-1-thread-11] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-22 05:19:00,068] [pool-1-thread-3] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-22 05:20:10,022] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-22 05:20:21,593] [pool-1-thread-1] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-22 05:20:39,460] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-10-22 05:21:25,292] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-22 05:21:29,955] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-22 05:21:54,860] [pool-1-thread-9] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-10-22 05:21:58,805] [pool-1-thread-8] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-22 05:22:00,992] [pool-1-thread-11] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-22 05:22:37,638] [pool-1-thread-9] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-22 05:22:54,247] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-22 05:23:03,174] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-22 05:23:24,487] [pool-1-thread-11] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-22 05:25:13,314] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-22 05:27:15,323] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-22 05:28:05,311] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-22 05:29:47,982] [pool-1-thread-12] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-22 05:29:59,171] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-22 05:30:09,234] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-10-22 05:30:59,448] [pool-1-thread-5] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-22 05:31:43,479] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-10-22 05:31:49,527] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-22 05:32:59,609] [pool-1-thread-3] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-22 05:33:17,104] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-22 05:34:06,162] [pool-1-thread-8] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-22 05:34:18,490] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-10-22 05:34:42,178] [pool-1-thread-8] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-22 05:34:44,211] [pool-1-thread-9] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-22 05:35:18,839] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-10-22 05:35:26,990] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-22 05:37:02,686] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-22 05:37:28,426] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-22 05:38:15,829] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-22 05:38:19,468] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-10-22 05:40:32,131] [pool-1-thread-5] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-22 05:45:47,604] [pool-1-thread-6] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-22 05:45:57,570] [pool-1-thread-7] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-22 05:46:18,152] [pool-1-thread-6] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-22 05:46:23,297] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-22 05:46:56,588] [pool-1-thread-2] Initializing /data/converted/stephan/notok2.tif: [testng] 05:54:50,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:54:50,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:54:50,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_05-54-50.log] [testng] 05:54:50,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@514ea14d - End of configuration. [testng] 06:22:15,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:22:15,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:22:15,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_06-22-15.log] [testng] 06:22:15,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0eeb26 - End of configuration. [testng] 06:24:54,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:24:54,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:24:54,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_06-24-54.log] [testng] 06:24:54,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c92d694 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 108 minutes 0 seconds Finished: SUCCESS