Started by upstream project "BIOFORMATS-test-repo" build number 232
originally caused by:
Started by upstream project "Trigger" build number 257
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13322082513860891403.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36522_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:32:48,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:32:48,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 05:32:48,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:32:48,573 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:32:48,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:32:48,574 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:32:48,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:32:48,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:32:48,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:32:48,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:32:48,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:32:48,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:32:48,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:32:48,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:32:48,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:32:48,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:32:48,759 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:32:48,760 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:32:48,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:32:48,760 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:32:48,760 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 05:32:48,761 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 05:32:48,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-23 05:32:48,770] [main] java.version = 17.0.2
[testng] 05:32:48,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:32:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:32:48,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-23_05-32-48.log]
[testng] 05:32:48,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-23 05:32:48,814] [main] testng.directory = /data
[testng] [2024-10-23 05:32:48,814] [main] testng.configDirectory = /config
[testng] [2024-10-23 05:32:48,822] [main] testng.multiplier = 1.0
[testng] [2024-10-23 05:32:48,823] [main] testng.in-memory = false
[testng] [2024-10-23 05:32:48,823] [main] testng.allow-missing = false
[testng] [2024-10-23 05:32:48,823] [main] user.language = en
[testng] [2024-10-23 05:32:48,823] [main] user.country = ${user.country}
[testng] [2024-10-23 05:32:48,823] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-23 05:32:53,628] [main] ----------------------------------------
[testng] [2024-10-23 05:32:53,628] [main] Total files: 22
[testng] [2024-10-23 05:32:53,628] [main] Scan time: 4.804 s (218 ms/file)
[testng] [2024-10-23 05:32:53,628] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-23 05:33:10,807] [pool-1-thread-1] Initializing /data/converted/clown.ipw:
[testng] 05:33:10,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:33:10,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:10,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-23_05-33-10.log]
[testng] 05:33:10,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45796421 - End of configuration.
[testng] [2024-10-23 05:33:11,179] [pool-1-thread-12] Initializing /data/converted/dub01.seq:
[testng] 05:33:11,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:33:11,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:11,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-23_05-33-11.log]
[testng] 05:33:11,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@365325a - End of configuration.
[testng] [2024-10-23 05:33:11,527] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF:
[testng] 05:33:11,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:33:11,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:11,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-23_05-33-11.log]
[testng] 05:33:11,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7685806e - End of configuration.
[testng] [2024-10-23 05:33:12,378] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 05:33:12,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:33:12,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:12,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-23_05-33-12.log]
[testng] 05:33:12,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4df108 - End of configuration.
[testng] [2024-10-23 05:33:12,700] [pool-1-thread-9] Initializing /data/converted/clown8c.seq:
[testng] 05:33:12,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:33:12,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:12,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-23_05-33-12.log]
[testng] 05:33:12,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c9e09e - End of configuration.
[testng] [2024-10-23 05:33:13,036] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq:
[testng] 05:33:13,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:33:13,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:13,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-23_05-33-13.log]
[testng] 05:33:13,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad472fa - End of configuration.
[testng] [2024-10-23 05:33:13,438] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw:
[testng] 05:33:13,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:33:13,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:13,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-23_05-33-13.log]
[testng] 05:33:13,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b2b86 - End of configuration.
[testng] [2024-10-23 05:33:13,941] [pool-1-thread-6] Initializing /data/converted/clown8c.tif:
[testng] 05:33:13,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:33:13,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:13,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-23_05-33-13.log]
[testng] 05:33:13,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4acc8fc1 - End of configuration.
[testng] [2024-10-23 05:33:14,943] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] 05:33:14,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:33:14,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:14,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-23_05-33-14.log]
[testng] 05:33:14,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2248a77e - End of configuration.
[testng] [2024-10-23 05:33:15,366] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 05:33:15,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:33:15,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:15,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-23_05-33-15.log]
[testng] 05:33:15,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad6c9be - End of configuration.
[testng] [2024-10-23 05:33:15,722] [pool-1-thread-3] Initializing /data/converted/dub01.pic:
[testng] 05:33:15,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:33:15,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:15,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-23_05-33-15.log]
[testng] 05:33:15,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1469858c - End of configuration.
[testng] [2024-10-23 05:33:16,022] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq:
[testng] 05:33:16,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:33:16,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:16,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-23_05-33-16.log]
[testng] 05:33:16,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a734d1 - End of configuration.
[testng] [2024-10-23 05:33:20,716] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-10-23 05:33:21,731] [pool-1-thread-4] Initializing /data/converted/clown.tif:
[testng] [2024-10-23 05:33:22,195] [pool-1-thread-2] Initializing /data/samples/PROBE.TIF:
[testng] [2024-10-23 05:33:22,541] [pool-1-thread-7] Initializing /data/converted/clown.seq:
[testng] [2024-10-23 05:33:22,912] [pool-1-thread-1] Initializing /data/samples/HEART.SEQ:
[testng] [2024-10-23 05:33:23,232] [pool-1-thread-3] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-10-23 05:33:24,089] [pool-1-thread-5] Initializing /data/converted/clown8c.ipw:
[testng] [2024-10-23 05:33:24,383] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-10-23 05:33:24,722] [pool-1-thread-10] Initializing /data/samples/TISSUE.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 4 seconds
Finished: SUCCESS