Started by upstream project "BIOFORMATS-test-repo" build number 233
originally caused by:
Started by upstream project "Trigger" build number 258
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3449626066578870258.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36539_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:22:32,645 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:22:32,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 01:22:32,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:32,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:32,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:22:32,648 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:22:32,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:22:32,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:32,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:32,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:22:32,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:22:32,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:22:32,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:32,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:32,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:32,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:32,845 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:32,845 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:32,846 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:32,846 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:32,846 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 01:22:32,847 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 01:22:32,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-24 01:22:32,856] [main] java.version = 21
[testng] 01:22:32,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:32,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_01-22-32.log]
[testng] 01:22:32,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-24 01:22:32,905] [main] testng.directory = /data
[testng] [2024-10-24 01:22:32,905] [main] testng.configDirectory = /config
[testng] [2024-10-24 01:22:32,914] [main] testng.multiplier = 1.0
[testng] [2024-10-24 01:22:32,915] [main] testng.in-memory = false
[testng] [2024-10-24 01:22:32,915] [main] testng.allow-missing = false
[testng] [2024-10-24 01:22:32,915] [main] user.language = en
[testng] [2024-10-24 01:22:32,915] [main] user.country = ${user.country}
[testng] [2024-10-24 01:22:32,915] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-24 01:23:01,591] [main] ----------------------------------------
[testng] [2024-10-24 01:23:01,592] [main] Total files: 315
[testng] [2024-10-24 01:23:01,592] [main] Scan time: 28.676 s (91 ms/file)
[testng] [2024-10-24 01:23:01,592] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-24 01:34:49,036] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] 01:34:49,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:34:49,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:49,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-24_01-34-49.log]
[testng] 01:34:49,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@271b419b - End of configuration.
[testng] [2024-10-24 01:34:56,460] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] 01:34:56,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:34:56,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:56,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-24_01-34-56.log]
[testng] 01:34:56,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ebd7eb8 - End of configuration.
[testng] [2024-10-24 01:34:56,673] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] 01:34:56,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:34:56,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:56,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-24_01-34-56.log]
[testng] 01:34:56,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf79357 - End of configuration.
[testng] [2024-10-24 01:34:57,187] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] 01:34:57,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:34:57,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:57,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-24_01-34-57.log]
[testng] 01:34:57,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f16aec - End of configuration.
[testng] [2024-10-24 01:34:57,611] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 01:34:57,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:34:57,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:57,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-24_01-34-57.log]
[testng] 01:34:57,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64e0b9fe - End of configuration.
[testng] [2024-10-24 01:34:58,037] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] 01:34:58,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:34:58,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:58,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_01-34-58.log]
[testng] 01:34:58,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6ae1e3 - End of configuration.
[testng] [2024-10-24 01:34:58,868] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] 01:34:58,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:34:58,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:58,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-24_01-34-58.log]
[testng] 01:34:58,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21229f14 - End of configuration.
[testng] [2024-10-24 01:34:59,151] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] 01:34:59,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:34:59,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:59,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-24_01-34-59.log]
[testng] 01:34:59,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e5f2c6 - End of configuration.
[testng] [2024-10-24 01:34:59,604] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] 01:34:59,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:34:59,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:59,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_01-34-59.log]
[testng] 01:34:59,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42287a29 - End of configuration.
[testng] [2024-10-24 01:35:00,035] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] 01:35:00,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:35:00,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:00,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_01-35-00.log]
[testng] 01:35:00,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d72ebd - End of configuration.
[testng] [2024-10-24 01:35:00,512] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] 01:35:00,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:35:00,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:00,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-24_01-35-00.log]
[testng] 01:35:00,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc7197e - End of configuration.
[testng] [2024-10-24 01:35:00,937] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] 01:35:00,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:35:00,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:00,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-24_01-35-00.log]
[testng] 01:35:00,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3426f95a - End of configuration.
[testng] [2024-10-24 01:35:05,455] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-10-24 01:35:06,520] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-24 01:35:06,946] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-10-24 01:35:07,649] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-24 01:35:07,980] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-24 01:35:08,382] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-24 01:35:08,965] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-24 01:35:09,331] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-24 01:35:09,730] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-24 01:35:13,450] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-24 01:35:14,060] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-24 01:35:15,141] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-24 01:35:15,581] [pool-1-thread-3] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-24 01:35:16,089] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-24 01:35:16,662] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-24 01:35:17,205] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-24 01:35:21,096] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-10-24 01:35:22,228] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-10-24 01:35:22,650] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-24 01:35:23,382] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-24 01:35:36,569] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-24 01:35:36,999] [pool-1-thread-2] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-24 01:35:38,969] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-24 01:35:46,733] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-24 01:35:49,814] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-24 01:35:50,565] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-24 01:35:51,369] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-24 01:35:52,082] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-24 01:35:53,026] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-24 01:35:53,731] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-10-24 01:35:54,328] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-10-24 01:35:58,312] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-24 01:35:58,761] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-24 01:35:59,298] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-10-24 01:36:00,181] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-24 01:36:00,691] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-24 01:36:01,640] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-10-24 01:36:04,020] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-24 01:36:04,484] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-24 01:36:05,110] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-24 01:36:05,822] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-24 01:36:06,076] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-24 01:36:06,554] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-24 01:36:06,995] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-24 01:36:07,772] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-24 01:36:10,779] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-24 01:36:25,122] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-24 01:36:26,437] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-24 01:36:26,790] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-24 01:36:27,420] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-24 01:36:28,230] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir:
[testng] [2024-10-24 01:36:30,919] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-24 01:36:31,272] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-24 01:36:32,070] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-24 01:36:33,211] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-24 01:36:34,900] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-24 01:36:55,446] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-24 01:36:57,497] [pool-1-thread-5] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-24 01:37:05,397] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-10-24 01:37:05,842] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-24 01:37:06,563] [pool-1-thread-2] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-24 01:37:08,858] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-24 01:37:12,526] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-24 01:37:17,360] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-24 01:37:20,081] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-10-24 01:37:22,898] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-24 01:37:25,302] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-24 01:37:28,688] [pool-1-thread-11] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-24 01:37:32,964] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-10-24 01:37:39,987] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-24 01:37:42,579] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-10-24 01:38:05,268] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-24 01:38:09,788] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-24 01:38:11,063] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-10-24 01:38:12,897] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-24 01:38:15,682] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-24 01:38:19,468] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-24 01:38:22,542] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-10-24 01:38:25,173] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-24 01:38:31,403] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-24 01:38:32,316] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-24 01:38:37,466] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-24 01:38:40,230] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-24 01:38:42,908] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-24 01:38:47,620] [pool-1-thread-7] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-24 01:38:47,837] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-24 01:40:14,361] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-24 01:40:18,153] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-10-24 01:40:22,145] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-24 01:40:25,932] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-24 01:40:27,290] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-24 01:40:31,336] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-24 01:40:32,936] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-24 01:40:34,373] [pool-1-thread-9] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-24 01:40:55,533] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-24 01:40:57,826] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-24 01:41:00,068] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-24 01:41:02,431] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-10-24 01:41:06,505] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-24 01:41:06,981] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-24 01:41:07,639] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-24 01:41:11,102] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-24 01:41:11,750] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-24 01:41:12,218] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-24 01:41:13,753] [pool-1-thread-4] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-10-24 01:41:17,078] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-24 01:41:18,642] [pool-1-thread-8] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-24 01:41:20,515] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-24 01:41:27,769] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-24 01:41:28,474] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-24 01:41:28,848] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-24 01:41:35,336] [pool-1-thread-11] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-24 01:41:36,962] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-24 01:41:38,998] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-24 01:41:45,529] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-24 01:41:47,167] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-10-24 01:41:47,495] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-24 01:41:50,113] [pool-1-thread-4] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-24 01:44:32,185] [pool-1-thread-11] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-24 01:44:34,813] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-10-24 01:44:36,116] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-24 01:44:37,658] [pool-1-thread-7] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-24 01:44:40,325] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-24 01:44:41,402] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-24 01:44:44,162] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-10-24 01:44:45,811] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-24 01:44:47,686] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-24 01:44:48,059] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-24 01:44:48,518] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-24 01:44:53,014] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-24 01:44:54,833] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-24 01:44:56,263] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-24 01:44:57,174] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-24 01:45:02,657] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-24 01:45:03,384] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-24 01:45:04,481] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-24 01:45:09,371] [pool-1-thread-12] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-24 01:45:10,110] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-24 01:45:12,684] [pool-1-thread-2] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-24 01:45:12,913] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-24 01:45:13,844] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-24 01:45:46,898] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-24 01:45:48,498] [pool-1-thread-12] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-24 01:45:50,430] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-24 01:45:52,375] [pool-1-thread-8] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-24 01:45:56,054] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-24 01:45:57,740] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-24 01:45:59,471] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-24 01:46:00,513] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-24 01:46:05,657] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-24 01:46:06,868] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-24 01:46:07,413] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-24 01:46:08,001] [pool-1-thread-2] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-24 01:46:08,205] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-24 01:46:11,057] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-24 01:46:12,520] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-24 01:46:16,537] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-24 01:46:16,853] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-10-24 01:46:18,398] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-24 01:46:19,750] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-24 01:46:22,021] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-24 01:46:22,566] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-24 01:46:23,703] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-24 01:46:25,159] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-24 01:46:25,509] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-10-24 01:46:27,559] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-24 01:46:28,233] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-24 01:46:28,670] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-24 01:46:29,762] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-24 01:46:34,428] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-24 01:46:35,119] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-24 01:46:35,428] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-24 01:46:37,580] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-24 01:46:39,093] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-24 01:46:40,438] [pool-1-thread-9] Initializing /data/qa-17335/1.oir:
[testng] [2024-10-24 01:46:41,005] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-24 01:46:42,760] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-24 01:46:45,123] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-24 01:46:45,569] [pool-1-thread-2] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-24 01:46:45,838] [pool-1-thread-8] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 58 minutes 39 seconds
Finished: SUCCESS