Started by upstream project "BIOFORMATS-test-repo" build number 233
originally caused by:
Started by upstream project "Trigger" build number 258
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins2193794693327553846.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36555_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:35:18,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:35:18,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 01:35:18,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:18,947 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:18,947 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:35:18,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:35:18,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:35:18,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:18,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:18,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:35:18,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:35:18,950 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:35:19,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:35:19,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:35:19,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:35:19,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:35:19,130 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:35:19,130 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:35:19,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:35:19,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:35:19,131 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 01:35:19,132 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 01:35:19,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-24 01:35:19,140] [main] java.version = 21
[testng] 01:35:19,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:35:19,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:19,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_01-35-19.log]
[testng] 01:35:19,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-24 01:35:19,186] [main] testng.directory = /data
[testng] [2024-10-24 01:35:19,186] [main] testng.configDirectory = /config
[testng] [2024-10-24 01:35:19,194] [main] testng.multiplier = 1.0
[testng] [2024-10-24 01:35:19,195] [main] testng.in-memory = false
[testng] [2024-10-24 01:35:19,195] [main] testng.allow-missing = false
[testng] [2024-10-24 01:35:19,195] [main] user.language = en
[testng] [2024-10-24 01:35:19,195] [main] user.country = ${user.country}
[testng] [2024-10-24 01:35:19,195] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-24 01:39:07,323] [main] ----------------------------------------
[testng] [2024-10-24 01:39:07,323] [main] Total files: 226
[testng] [2024-10-24 01:39:07,323] [main] Scan time: 228.128 s (1009 ms/file)
[testng] [2024-10-24 01:39:07,324] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-24 01:42:51,468] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 01:42:51,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:42:51,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:51,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-24_01-42-51.log]
[testng] 01:42:51,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d8feaa1 - End of configuration.
[testng] [2024-10-24 01:42:52,649] [pool-1-thread-12] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 01:42:52,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:42:52,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:52,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-24_01-42-52.log]
[testng] 01:42:52,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54be2924 - End of configuration.
[testng] [2024-10-24 01:42:52,798] [pool-1-thread-11] Initializing /data/iplab/Blend_Final.IPL:
[testng] 01:42:52,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:42:52,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:52,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-24_01-42-52.log]
[testng] 01:42:52,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2878c1ae - End of configuration.
[testng] [2024-10-24 01:42:52,956] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:42:52,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:42:52,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:52,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-24_01-42-52.log]
[testng] 01:42:52,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6057f525 - End of configuration.
[testng] [2024-10-24 01:42:53,993] [pool-1-thread-9] Initializing /data/iplab/Color Image.IPL:
[testng] 01:42:53,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:42:53,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:53,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-24_01-42-53.log]
[testng] 01:42:53,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436c8730 - End of configuration.
[testng] [2024-10-24 01:42:54,115] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] 01:42:54,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:42:54,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:54,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_01-42-54.log]
[testng] 01:42:54,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee4d5 - End of configuration.
[testng] [2024-10-24 01:42:54,838] [pool-1-thread-7] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 01:42:54,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:42:54,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:54,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-24_01-42-54.log]
[testng] 01:42:54,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9276d7 - End of configuration.
[testng] [2024-10-24 01:42:54,957] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 01:42:54,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:42:54,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:54,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-24_01-42-54.log]
[testng] 01:42:54,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bef57b1 - End of configuration.
[testng] [2024-10-24 01:42:55,067] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 01:42:55,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:42:55,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_01-42-55.log]
[testng] 01:42:55,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e61c4b - End of configuration.
[testng] [2024-10-24 01:42:55,174] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL:
[testng] 01:42:55,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:42:55,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_01-42-55.log]
[testng] 01:42:55,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fdc1a62 - End of configuration.
[testng] [2024-10-24 01:42:55,241] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 01:42:55,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:42:55,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-24_01-42-55.log]
[testng] 01:42:55,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee168cb - End of configuration.
[testng] [2024-10-24 01:42:55,335] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 01:42:55,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:42:55,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-24_01-42-55.log]
[testng] 01:42:55,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b25825 - End of configuration.
[testng] [2024-10-24 01:42:59,157] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-10-24 01:42:59,771] [pool-1-thread-6] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-10-24 01:43:00,305] [pool-1-thread-11] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-10-24 01:43:00,353] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-10-24 01:43:00,420] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-10-24 01:43:00,733] [pool-1-thread-9] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-10-24 01:43:00,781] [pool-1-thread-4] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-10-24 01:43:00,830] [pool-1-thread-3] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-10-24 01:43:01,876] [pool-1-thread-11] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] [2024-10-24 01:43:01,963] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-10-24 01:43:02,379] [pool-1-thread-4] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-10-24 01:43:02,852] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-10-24 01:43:03,374] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-10-24 01:43:04,299] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-10-24 01:43:05,657] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-10-24 01:43:07,007] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 minutes 54 seconds
Finished: SUCCESS