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Started by upstream project "BIOFORMATS-test-repo" build number 233 originally caused by: Started by upstream project "Trigger" build number 258 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13801639714442857260.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36570_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:49:41,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:49:41,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:49:41,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:49:41,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:49:41,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:49:41,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:49:41,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:49:41,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:49:41,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:49:41,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:49:41,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:49:41,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:49:41,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:49:41,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:49:42,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:49:42,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:49:42,027 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:49:42,027 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:49:42,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:49:42,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:49:42,028 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:49:42,029 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:49:42,029 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 221 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-24 01:49:42,038] [main] java.version = 21 [testng] 01:49:42,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:49:42,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:42,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_01-49-42.log] [testng] 01:49:42,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-24 01:49:42,092] [main] testng.directory = /data [testng] [2024-10-24 01:49:42,092] [main] testng.configDirectory = /config [testng] [2024-10-24 01:49:42,102] [main] testng.multiplier = 1.0 [testng] [2024-10-24 01:49:42,102] [main] testng.in-memory = false [testng] [2024-10-24 01:49:42,102] [main] testng.allow-missing = false [testng] [2024-10-24 01:49:42,102] [main] user.language = en [testng] [2024-10-24 01:49:42,102] [main] user.country = ${user.country} [testng] [2024-10-24 01:49:42,103] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-24 01:50:05,897] [main] ---------------------------------------- [testng] [2024-10-24 01:50:05,897] [main] Total files: 259 [testng] [2024-10-24 01:50:05,898] [main] Scan time: 23.794 s (91 ms/file) [testng] [2024-10-24 01:50:05,898] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-24 01:56:26,449] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 01:56:26,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:56:26,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:26,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-24_01-56-26.log] [testng] 01:56:26,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a64877 - End of configuration. [testng] [2024-10-24 01:56:35,040] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 01:56:35,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:56:35,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:35,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-24_01-56-35.log] [testng] 01:56:35,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1da4d690 - End of configuration. [testng] [2024-10-24 01:56:35,496] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 01:56:35,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:56:35,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:35,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-24_01-56-35.log] [testng] 01:56:35,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7996bb6b - End of configuration. [testng] [2024-10-24 01:56:35,537] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 01:56:35,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:56:35,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:35,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-24_01-56-35.log] [testng] 01:56:35,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36624c87 - End of configuration. [testng] [2024-10-24 01:56:35,990] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 01:56:35,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:56:35,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:35,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-24_01-56-35.log] [testng] 01:56:35,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78733ad1 - End of configuration. [testng] [2024-10-24 01:56:36,268] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 01:56:36,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:56:36,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:36,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_01-56-36.log] [testng] 01:56:36,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc24ef9 - End of configuration. [testng] [2024-10-24 01:56:38,610] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 01:56:38,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:56:38,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:38,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-24_01-56-38.log] [testng] 01:56:38,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d654a70 - End of configuration. [testng] [2024-10-24 01:56:38,967] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 01:56:38,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:56:38,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:38,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-24_01-56-38.log] [testng] 01:56:38,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64facc0f - End of configuration. [testng] [2024-10-24 01:56:39,215] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 01:56:39,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:56:39,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:39,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_01-56-39.log] [testng] 01:56:39,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145564dc - End of configuration. [testng] [2024-10-24 01:56:39,622] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 01:56:39,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:56:39,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:39,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_01-56-39.log] [testng] 01:56:39,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15755609 - End of configuration. [testng] [2024-10-24 01:57:09,902] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 01:57:09,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:57:09,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:09,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-24_01-57-09.log] [testng] 01:57:09,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bf40750 - End of configuration. [testng] [2024-10-24 01:57:10,202] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 01:57:10,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:57:10,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:10,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-24_01-57-10.log] [testng] 01:57:10,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30eed605 - End of configuration. [testng] [2024-10-24 01:57:13,871] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-24 01:57:18,112] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-10-24 01:57:18,954] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-10-24 01:57:19,574] [pool-1-thread-6] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-24 01:57:20,245] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-24 01:57:20,318] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-24 01:57:22,444] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-24 01:57:24,088] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-24 01:57:24,532] [pool-1-thread-6] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-24 01:57:27,479] [pool-1-thread-12] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-24 01:57:28,908] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] [2024-10-24 01:57:29,861] [pool-1-thread-10] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-24 01:57:30,821] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-10-24 01:57:31,345] [pool-1-thread-9] Initializing /data/glen/Image0002.oif: [testng] [2024-10-24 01:57:33,753] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-24 01:57:34,605] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-24 01:57:35,405] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-24 01:57:37,095] [pool-1-thread-7] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-24 01:57:39,359] [pool-1-thread-8] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-24 01:57:40,130] [pool-1-thread-3] Initializing /data/johannes/step1.bmp: [testng] [2024-10-24 01:57:40,434] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-24 01:57:42,388] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-24 01:57:43,048] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-24 01:57:43,942] [pool-1-thread-5] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-24 01:57:44,713] [pool-1-thread-7] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-24 01:57:47,555] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-24 01:57:48,117] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-24 01:57:48,520] [pool-1-thread-6] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-24 01:57:49,112] [pool-1-thread-8] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-24 01:57:49,659] [pool-1-thread-3] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-24 01:57:50,250] [pool-1-thread-11] Initializing /data/michael/CELL3.oib: [testng] [2024-10-24 01:57:52,906] [pool-1-thread-3] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-24 01:57:53,779] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-24 01:57:54,401] [pool-1-thread-6] Initializing /data/simon/never_worked.oib: [testng] [2024-10-24 01:57:55,126] [pool-1-thread-11] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-24 01:57:55,245] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-24 01:57:58,336] [pool-1-thread-11] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-24 01:58:00,208] [pool-1-thread-3] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-24 01:58:06,998] [pool-1-thread-6] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-24 01:58:07,932] [pool-1-thread-7] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-24 01:58:08,363] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-24 01:58:09,547] [pool-1-thread-10] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-24 01:58:11,845] [pool-1-thread-6] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-24 01:58:12,473] [pool-1-thread-7] Initializing /data/marc/V0606L.oib: [testng] [2024-10-24 01:58:14,090] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-24 01:58:16,315] [pool-1-thread-10] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-24 01:58:18,114] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-24 01:58:19,592] [pool-1-thread-10] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-24 01:58:19,976] [pool-1-thread-5] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-24 01:58:20,982] [pool-1-thread-10] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-24 01:58:21,923] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-24 01:58:24,821] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-24 01:58:28,408] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-24 01:58:38,346] [pool-1-thread-7] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-24 01:58:39,820] [pool-1-thread-6] Initializing /data/david/Image0016.oif: [testng] [2024-10-24 01:58:40,832] [pool-1-thread-11] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-24 01:58:41,988] [pool-1-thread-8] Initializing /data/marc/V0606J.oib: [testng] [2024-10-24 01:58:44,995] [pool-1-thread-7] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-24 01:59:03,948] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-24 01:59:06,980] [pool-1-thread-8] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-24 01:59:34,874] [pool-1-thread-6] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-24 01:59:36,284] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-24 01:59:41,168] [pool-1-thread-12] Initializing /data/sten/01.oib: [testng] [2024-10-24 01:59:43,907] [pool-1-thread-12] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-24 01:59:46,207] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-24 01:59:47,189] [pool-1-thread-12] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-24 01:59:50,526] [pool-1-thread-6] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-24 01:59:54,445] [pool-1-thread-6] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-24 02:06:09,240] [pool-1-thread-11] Initializing /data/jae/Image0001.oib: [testng] [2024-10-24 02:06:15,395] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-24 02:06:21,340] [pool-1-thread-11] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-24 02:09:09,945] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-24 02:09:15,161] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-24 02:09:23,631] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-24 02:09:28,821] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-24 02:09:33,700] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-24 02:10:28,922] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-24 02:10:33,917] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-24 02:10:37,607] [pool-1-thread-2] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-24 02:10:38,137] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-24 02:10:41,760] [pool-1-thread-12] Initializing /data/christian/20min.oif: [testng] [2024-10-24 02:10:42,691] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-24 02:10:48,780] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-10-24 02:11:00,679] [pool-1-thread-12] Initializing /data/glen/simulstack.oif: [testng] [2024-10-24 02:12:36,622] [pool-1-thread-9] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-24 02:12:41,950] [pool-1-thread-9] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-24 02:12:46,604] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-24 02:14:47,527] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-10-24 02:15:21,081] [pool-1-thread-3] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-24 02:15:47,457] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-24 02:15:52,656] [pool-1-thread-3] Initializing /data/glen/simulstack.oib: [testng] [2024-10-24 02:15:57,021] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-24 02:16:02,717] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-24 02:16:07,361] [pool-1-thread-3] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-24 02:16:13,907] [pool-1-thread-3] Initializing /data/allan/62909#1.oib: [testng] [2024-10-24 02:16:16,765] [pool-1-thread-3] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-24 02:16:28,207] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-24 02:18:09,485] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-24 02:19:04,171] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-10-24 02:19:11,246] [pool-1-thread-5] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-24 02:19:42,376] [pool-1-thread-6] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-24 02:24:15,443] [pool-1-thread-2] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-24 02:24:49,605] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-24 02:24:53,516] [pool-1-thread-10] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-24 02:25:00,502] [pool-1-thread-2] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-24 02:25:03,107] [pool-1-thread-12] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-24 02:25:08,283] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-24 02:25:13,120] [pool-1-thread-10] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-24 02:25:28,200] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-24 02:25:38,530] [pool-1-thread-10] Initializing /data/karl/Image0009.oib: [testng] [2024-10-24 02:25:46,256] [pool-1-thread-10] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-24 02:26:45,469] [pool-1-thread-12] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-24 02:26:52,893] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-24 02:27:01,593] [pool-1-thread-12] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-24 02:30:49,238] [pool-1-thread-2] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-24 02:30:55,698] [pool-1-thread-2] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-24 02:31:01,706] [pool-1-thread-2] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-24 02:31:10,827] [pool-1-thread-2] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-24 02:31:23,456] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-24 02:31:30,264] [pool-1-thread-5] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-24 02:33:03,021] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-24 02:33:04,551] [pool-1-thread-11] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-24 02:34:49,766] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-10-24 02:35:36,420] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-24 02:35:41,214] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-24 02:35:45,157] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-24 02:36:36,245] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-24 02:36:43,258] [pool-1-thread-11] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-24 02:36:46,156] [pool-1-thread-11] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-24 02:36:50,637] [pool-1-thread-11] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-24 02:36:53,709] [pool-1-thread-11] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-24 02:37:22,646] [pool-1-thread-11] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 03:01:35,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:01:35,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:35,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_03-01-35.log] [testng] 03:01:35,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33ce3f1b - End of configuration. [testng] 03:23:32,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:23:32,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:23:32,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_03-23-32.log] [testng] 03:23:32,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568e68c7 - End of configuration. [testng] 03:45:32,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:45:32,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:32,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_03-45-32.log] [testng] 03:45:32,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@864f0a8 - End of configuration. [testng] 03:53:05,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:53:05,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:05,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_03-53-05.log] [testng] 03:53:05,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0d555f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 123 minutes 28 seconds Finished: SUCCESS