Started by upstream project "BIOFORMATS-test-repo" build number 233
originally caused by:
Started by upstream project "Trigger" build number 258
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins782067784301619900.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36595_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:38:12,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:38:12,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 02:38:12,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:38:12,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:38:12,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:38:12,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:38:12,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:38:12,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:38:12,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:38:12,176 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:38:12,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:38:12,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:38:12,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:38:12,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:38:12,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:38:12,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:38:12,353 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:38:12,353 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:38:12,353 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:38:12,353 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:38:12,353 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 02:38:12,354 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 02:38:12,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-24 02:38:12,363] [main] java.version = 21
[testng] 02:38:12,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:38:12,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:12,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_02-38-12.log]
[testng] 02:38:12,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-24 02:38:12,408] [main] testng.directory = /data
[testng] [2024-10-24 02:38:12,408] [main] testng.configDirectory = /config
[testng] [2024-10-24 02:38:12,416] [main] testng.multiplier = 1.0
[testng] [2024-10-24 02:38:12,417] [main] testng.in-memory = false
[testng] [2024-10-24 02:38:12,417] [main] testng.allow-missing = false
[testng] [2024-10-24 02:38:12,417] [main] user.language = en
[testng] [2024-10-24 02:38:12,417] [main] user.country = ${user.country}
[testng] [2024-10-24 02:38:12,417] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-24 02:38:25,804] [main] ----------------------------------------
[testng] [2024-10-24 02:38:25,804] [main] Total files: 25
[testng] [2024-10-24 02:38:25,804] [main] Scan time: 13.387 s (535 ms/file)
[testng] [2024-10-24 02:38:25,805] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-24 02:38:43,346] [pool-1-thread-1] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 02:38:43,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:38:43,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:43,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-24_02-38-43.log]
[testng] 02:38:43,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e2d32e7 - End of configuration.
[testng] [2024-10-24 02:38:43,419] [pool-1-thread-12] Initializing /data/imagic/TEM 10118.dm2:
[testng] 02:38:43,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:38:43,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:43,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-24_02-38-43.log]
[testng] 02:38:43,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7278c9a5 - End of configuration.
[testng] [2024-10-24 02:38:44,004] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 02:38:44,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:38:44,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:44,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-24_02-38-44.log]
[testng] 02:38:44,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e7a2e6 - End of configuration.
[testng] [2024-10-24 02:38:44,385] [pool-1-thread-10] Initializing /data/pang/unproc-auto:
[testng] 02:38:44,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:38:44,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:44,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-24_02-38-44.log]
[testng] 02:38:44,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141fc1fc - End of configuration.
[testng] [2024-10-24 02:38:44,651] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 02:38:44,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:38:44,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:44,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-24_02-38-44.log]
[testng] 02:38:44,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7230887c - End of configuration.
[testng] [2024-10-24 02:38:44,692] [pool-1-thread-8] Initializing /data/imagic/1-1.dm2:
[testng] 02:38:44,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:38:44,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:44,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_02-38-44.log]
[testng] 02:38:44,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e6cf46b - End of configuration.
[testng] [2024-10-24 02:38:44,908] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] 02:38:44,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:38:44,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:44,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-24_02-38-44.log]
[testng] 02:38:44,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b9e56c - End of configuration.
[testng] [2024-10-24 02:38:44,971] [pool-1-thread-6] Initializing /data/pang/signed:
[testng] 02:38:44,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:38:44,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:44,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-24_02-38-44.log]
[testng] 02:38:44,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69982740 - End of configuration.
[testng] [2024-10-24 02:38:45,186] [pool-1-thread-5] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] 02:38:45,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:38:45,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:45,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_02-38-45.log]
[testng] 02:38:45,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73cc0dbf - End of configuration.
[testng] [2024-10-24 02:38:45,386] [pool-1-thread-4] Initializing /data/pang/10500x-o4:
[testng] 02:38:45,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:38:45,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:45,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_02-38-45.log]
[testng] 02:38:45,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b1d8a96 - End of configuration.
[testng] [2024-10-24 02:38:45,614] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 02:38:45,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:38:45,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:45,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-24_02-38-45.log]
[testng] 02:38:45,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7977734b - End of configuration.
[testng] [2024-10-24 02:38:45,654] [pool-1-thread-2] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 02:38:45,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:38:45,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:45,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-24_02-38-45.log]
[testng] 02:38:45,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bbafb1a - End of configuration.
[testng] [2024-10-24 02:38:48,270] [pool-1-thread-2] Initializing /data/imagic/13008.dm2:
[testng] [2024-10-24 02:38:48,509] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] [2024-10-24 02:38:48,549] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] [2024-10-24 02:38:48,743] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] [2024-10-24 02:38:48,780] [pool-1-thread-9] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] [2024-10-24 02:38:48,991] [pool-1-thread-3] Initializing /data/pang/grating025k.dm2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS