Started by upstream project "BIOFORMATS-test-repo" build number 233
originally caused by:
Started by upstream project "Trigger" build number 258
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12104835908409723626.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36617_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:02:56,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:02:56,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 03:02:56,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:02:56,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:02:56,488 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:02:56,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:02:56,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:02:56,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:02:56,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:02:56,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:02:56,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:02:56,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:02:56,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:02:56,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:02:56,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:02:56,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:02:56,690 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:02:56,690 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:02:56,690 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:02:56,691 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:02:56,691 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 03:02:56,692 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 03:02:56,692 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-24 03:02:56,701] [main] java.version = 21
[testng] 03:02:56,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:02:56,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:02:56,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_03-02-56.log]
[testng] 03:02:56,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-24 03:02:56,749] [main] testng.directory = /data
[testng] [2024-10-24 03:02:56,749] [main] testng.configDirectory = /config
[testng] [2024-10-24 03:02:56,758] [main] testng.multiplier = 1.0
[testng] [2024-10-24 03:02:56,758] [main] testng.in-memory = false
[testng] [2024-10-24 03:02:56,758] [main] testng.allow-missing = false
[testng] [2024-10-24 03:02:56,758] [main] user.language = en
[testng] [2024-10-24 03:02:56,758] [main] user.country = ${user.country}
[testng] [2024-10-24 03:02:56,758] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-24 03:06:39,479] [main] ----------------------------------------
[testng] [2024-10-24 03:06:39,480] [main] Total files: 268
[testng] [2024-10-24 03:06:39,480] [main] Scan time: 222.72 s (831 ms/file)
[testng] [2024-10-24 03:06:39,481] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-24 03:11:21,070] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] 03:11:21,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:11:21,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:21,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-24_03-11-21.log]
[testng] 03:11:21,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34716956 - End of configuration.
[testng] [2024-10-24 03:11:22,863] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] 03:11:22,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:11:22,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:22,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-24_03-11-22.log]
[testng] 03:11:22,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@311818bb - End of configuration.
[testng] [2024-10-24 03:11:23,534] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] 03:11:23,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:11:23,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:23,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-24_03-11-23.log]
[testng] 03:11:23,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e0d50f6 - End of configuration.
[testng] [2024-10-24 03:11:24,799] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] 03:11:24,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:11:24,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:24,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-24_03-11-24.log]
[testng] 03:11:24,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad1cfcc - End of configuration.
[testng] [2024-10-24 03:11:25,628] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] 03:11:25,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:11:25,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:25,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-24_03-11-25.log]
[testng] 03:11:25,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73199264 - End of configuration.
[testng] [2024-10-24 03:11:26,844] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] 03:11:26,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:11:26,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:26,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_03-11-26.log]
[testng] 03:11:26,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a4dce8d - End of configuration.
[testng] [2024-10-24 03:11:27,500] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] 03:11:27,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:11:27,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:27,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-24_03-11-27.log]
[testng] 03:11:27,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f8efa5b - End of configuration.
[testng] [2024-10-24 03:11:28,357] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] 03:11:28,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:11:28,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:28,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-24_03-11-28.log]
[testng] 03:11:28,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa9cfbf - End of configuration.
[testng] [2024-10-24 03:11:28,873] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] 03:11:28,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:11:28,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:28,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_03-11-28.log]
[testng] 03:11:28,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4203f11b - End of configuration.
[testng] [2024-10-24 03:11:29,346] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] 03:11:29,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:11:29,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:29,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_03-11-29.log]
[testng] 03:11:29,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601b169e - End of configuration.
[testng] [2024-10-24 03:11:30,100] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] 03:11:30,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:11:30,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:30,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-24_03-11-30.log]
[testng] 03:11:30,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa3ea57 - End of configuration.
[testng] [2024-10-24 03:11:30,871] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] 03:11:30,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:11:30,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:11:30,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-24_03-11-30.log]
[testng] 03:11:30,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2000e8d5 - End of configuration.
[testng] [2024-10-24 03:11:37,182] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-10-24 03:11:40,569] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-10-24 03:11:41,006] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] [2024-10-24 03:11:42,014] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-10-24 03:11:42,612] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-10-24 03:11:42,907] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-10-24 03:11:44,579] [pool-1-thread-12] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-10-24 03:11:45,729] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-10-24 03:11:48,282] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-10-24 03:11:49,527] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-10-24 03:11:50,177] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-10-24 03:11:50,512] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-10-24 03:11:52,578] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-10-24 03:11:53,384] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-10-24 03:11:53,926] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-10-24 03:11:56,322] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-10-24 03:11:56,908] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-10-24 03:11:58,910] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-10-24 03:12:00,207] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-10-24 03:12:02,256] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-10-24 03:12:03,003] [pool-1-thread-3] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-10-24 03:12:03,223] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-10-24 03:12:05,001] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-10-24 03:12:07,132] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-10-24 03:12:09,242] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-10-24 03:12:09,554] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-10-24 03:12:11,143] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-10-24 03:12:11,284] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-10-24 03:12:13,973] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-10-24 03:12:15,371] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-10-24 03:12:17,561] [pool-1-thread-1] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-10-24 03:12:20,292] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-10-24 03:12:21,168] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-10-24 03:12:23,040] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-10-24 03:12:24,122] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-10-24 03:12:24,922] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-10-24 03:12:28,017] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-10-24 03:12:28,874] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-10-24 03:12:29,711] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-10-24 03:12:31,625] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-10-24 03:12:33,654] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-10-24 03:12:34,642] [pool-1-thread-6] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-10-24 03:12:36,543] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-10-24 03:12:39,022] [pool-1-thread-12] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-10-24 03:12:39,400] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-10-24 03:12:41,801] [pool-1-thread-2] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-10-24 03:12:44,183] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-10-24 03:12:44,683] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-10-24 03:12:45,113] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-10-24 03:12:46,117] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-10-24 03:12:49,450] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-10-24 03:12:49,985] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-10-24 03:12:50,677] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] [2024-10-24 03:12:51,508] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-10-24 03:12:52,474] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-10-24 03:12:52,904] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] [2024-10-24 03:12:54,409] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-10-24 03:12:56,202] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-10-24 03:12:56,484] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-10-24 03:12:56,955] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-10-24 03:12:57,271] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-10-24 03:13:00,098] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-10-24 03:13:00,645] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-10-24 03:13:01,112] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-10-24 03:13:01,570] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-10-24 03:13:01,909] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] [2024-10-24 03:13:02,595] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-10-24 03:13:04,756] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-10-24 03:13:05,219] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-10-24 03:13:05,947] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-10-24 03:13:06,582] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-10-24 03:13:08,463] [pool-1-thread-1] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-10-24 03:13:11,736] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-10-24 03:13:12,730] [pool-1-thread-2] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-10-24 03:13:13,374] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-10-24 03:13:14,235] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-10-24 03:13:14,900] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-10-24 03:13:15,534] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-10-24 03:13:16,162] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-10-24 03:13:16,349] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-10-24 03:13:16,472] [pool-1-thread-6] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-10-24 03:13:19,308] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-10-24 03:13:20,977] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-10-24 03:13:21,469] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-10-24 03:13:22,237] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] [2024-10-24 03:13:22,621] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-10-24 03:13:23,089] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-10-24 03:13:25,567] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-10-24 03:13:26,317] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-10-24 03:13:26,631] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-10-24 03:13:27,254] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-10-24 03:13:28,852] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-10-24 03:13:31,100] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-10-24 03:13:32,394] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] [2024-10-24 03:13:34,039] [pool-1-thread-12] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-10-24 03:13:35,813] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-10-24 03:13:36,164] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-10-24 03:13:37,899] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-10-24 03:13:38,577] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-10-24 03:13:39,305] [pool-1-thread-9] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-10-24 03:13:40,437] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-10-24 03:13:41,830] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-10-24 03:13:44,143] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-10-24 03:13:45,371] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-10-24 03:13:45,950] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-10-24 03:13:46,415] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-10-24 03:13:47,859] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-10-24 03:13:49,556] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-10-24 03:13:49,666] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-10-24 03:13:50,617] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-10-24 03:13:53,256] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-10-24 03:13:54,747] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-10-24 03:13:56,416] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-10-24 03:13:57,854] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-10-24 03:13:58,633] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-10-24 03:14:00,333] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-10-24 03:14:01,037] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-10-24 03:14:03,773] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-10-24 03:14:04,336] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-10-24 03:14:05,145] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-10-24 03:14:05,880] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-10-24 03:14:06,347] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-10-24 03:14:07,267] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-10-24 03:14:07,747] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-10-24 03:14:07,972] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-10-24 03:14:08,290] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-10-24 03:14:11,772] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-10-24 03:14:12,384] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-10-24 03:14:13,427] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-10-24 03:14:13,960] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-10-24 03:14:15,471] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-10-24 03:14:15,915] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-10-24 03:14:16,039] [pool-1-thread-4] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-10-24 03:14:17,678] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-10-24 03:14:18,052] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-10-24 03:14:18,728] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-10-24 03:14:19,777] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-10-24 03:14:21,028] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-10-24 03:14:21,780] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-10-24 03:14:23,328] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-10-24 03:14:24,076] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-10-24 03:14:25,634] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-10-24 03:14:27,369] [pool-1-thread-10] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-10-24 03:14:30,082] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-10-24 03:14:30,562] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-10-24 03:14:30,914] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-10-24 03:14:31,871] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-10-24 03:14:33,754] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 minutes 52 seconds
Finished: SUCCESS