Started by upstream project "BIOFORMATS-test-repo" build number 233
originally caused by:
Started by upstream project "Trigger" build number 258
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9882955019859058533.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36661_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:45:21,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:45:21,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 04:45:21,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:45:21,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:45:21,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:45:21,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:45:21,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:45:21,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:45:21,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:45:21,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:45:21,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:45:21,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:45:21,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:45:21,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:45:21,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:45:21,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:45:21,927 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:45:21,927 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:45:21,927 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:45:21,927 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:45:21,927 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 04:45:21,928 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 04:45:21,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-24 04:45:21,937] [main] java.version = 21
[testng] 04:45:21,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:45:21,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:21,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-24_04-45-21.log]
[testng] 04:45:21,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-24 04:45:21,985] [main] testng.directory = /data
[testng] [2024-10-24 04:45:21,985] [main] testng.configDirectory = /config
[testng] [2024-10-24 04:45:21,999] [main] testng.multiplier = 1.0
[testng] [2024-10-24 04:45:22,000] [main] testng.in-memory = false
[testng] [2024-10-24 04:45:22,000] [main] testng.allow-missing = false
[testng] [2024-10-24 04:45:22,001] [main] user.language = en
[testng] [2024-10-24 04:45:22,001] [main] user.country = ${user.country}
[testng] [2024-10-24 04:45:22,001] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-24 04:45:23,316] [main] ----------------------------------------
[testng] [2024-10-24 04:45:23,316] [main] Total files: 18
[testng] [2024-10-24 04:45:23,316] [main] Scan time: 1.315 s (73 ms/file)
[testng] [2024-10-24 04:45:23,317] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-24 04:45:32,220] [pool-1-thread-1] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 04:45:32,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:45:32,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:32,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-24_04-45-32.log]
[testng] 04:45:32,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22157f53 - End of configuration.
[testng] [2024-10-24 04:45:32,645] [pool-1-thread-12] Initializing /data/misc/smilie.psd:
[testng] 04:45:32,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:45:32,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:32,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-24_04-45-32.log]
[testng] 04:45:32,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd7dd74 - End of configuration.
[testng] [2024-10-24 04:45:32,992] [pool-1-thread-11] Initializing /data/misc/vig_drawing_1.psd:
[testng] 04:45:32,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:45:32,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:32,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-24_04-45-32.log]
[testng] 04:45:32,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba7d139 - End of configuration.
[testng] [2024-10-24 04:45:33,339] [pool-1-thread-10] Initializing /data/ascb/607x.psd:
[testng] 04:45:33,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:45:33,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:33,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-24_04-45-33.log]
[testng] 04:45:33,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20f1590e - End of configuration.
[testng] [2024-10-24 04:45:33,760] [pool-1-thread-9] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 04:45:33,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:45:33,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:33,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-24_04-45-33.log]
[testng] 04:45:33,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9653c1 - End of configuration.
[testng] [2024-10-24 04:45:34,227] [pool-1-thread-8] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 04:45:34,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:45:34,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:34,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-24_04-45-34.log]
[testng] 04:45:34,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ca2f6e - End of configuration.
[testng] [2024-10-24 04:45:34,682] [pool-1-thread-7] Initializing /data/big-images/8kx8k.psd:
[testng] 04:45:34,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:45:34,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:34,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-24_04-45-34.log]
[testng] 04:45:34,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration.
[testng] [2024-10-24 04:45:35,109] [pool-1-thread-6] Initializing /data/misc/glossy_orbs.psd:
[testng] 04:45:35,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:45:35,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:35,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-24_04-45-35.log]
[testng] 04:45:35,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6370a348 - End of configuration.
[testng] [2024-10-24 04:45:35,502] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd:
[testng] 04:45:35,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:45:35,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:35,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-24_04-45-35.log]
[testng] 04:45:35,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration.
[testng] [2024-10-24 04:45:35,931] [pool-1-thread-4] Initializing /data/cris/house.tif:
[testng] 04:45:35,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:45:35,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:35,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-24_04-45-35.log]
[testng] 04:45:35,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration.
[testng] [2024-10-24 04:45:37,639] [pool-1-thread-3] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 04:45:37,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:45:37,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:37,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-24_04-45-37.log]
[testng] 04:45:37,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7616bded - End of configuration.
[testng] [2024-10-24 04:45:38,135] [pool-1-thread-2] Initializing /data/misc/glossy_buttons.psd:
[testng] 04:45:38,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:45:38,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:45:38,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-24_04-45-38.log]
[testng] 04:45:38,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15c47c58 - End of configuration.
[testng] [2024-10-24 04:45:45,704] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] [2024-10-24 04:45:46,952] [pool-1-thread-1] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-10-24 04:45:47,701] [pool-1-thread-5] Initializing /data/misc/venus_composite_8bit.psd:
[testng] [2024-10-24 04:45:48,729] [pool-1-thread-8] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] [2024-10-24 04:45:49,423] [pool-1-thread-3] Initializing /data/ascb/423.psd:
[testng] [2024-10-24 04:45:50,224] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS