Started by upstream project "BIOFORMATS-test-repo" build number 28
originally caused by:
Started by upstream project "Trigger" build number 31
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins6837146852003483295.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3669_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:04:25,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:04:25,278 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:04:25,278 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:04:25,279 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:04:25,280 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:04:25,280 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:04:25,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:04:25,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:04:25,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:04:25,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:04:25,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:04:25,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:04:25,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:04:25,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:04:25,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:04:25,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:04:25,491 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:04:25,491 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:04:25,491 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:04:25,492 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:04:25,492 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:04:25,493 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:04:25,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-09 02:04:25,502] [main] java.version = 11.0.16
[testng] 02:04:25,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:04:25,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:25,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-09_02-04-25.log]
[testng] 02:04:25,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-04-09 02:04:25,552] [main] testng.directory = /data
[testng] [2024-04-09 02:04:25,552] [main] testng.configDirectory = /config
[testng] [2024-04-09 02:04:25,562] [main] testng.multiplier = 1.0
[testng] [2024-04-09 02:04:25,563] [main] testng.in-memory = false
[testng] [2024-04-09 02:04:25,563] [main] testng.allow-missing = false
[testng] [2024-04-09 02:04:25,563] [main] user.language = en
[testng] [2024-04-09 02:04:25,563] [main] user.country = ${user.country}
[testng] [2024-04-09 02:04:25,564] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-09 02:04:35,905] [main] ----------------------------------------
[testng] [2024-04-09 02:04:35,906] [main] Total files: 268
[testng] [2024-04-09 02:04:35,906] [main] Scan time: 10.341 s (38 ms/file)
[testng] [2024-04-09 02:04:35,906] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-09 02:04:46,337] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] 02:04:46,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:04:46,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-09_02-04-46.log]
[testng] 02:04:46,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e158ee6 - End of configuration.
[testng] [2024-04-09 02:04:46,375] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] 02:04:46,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:04:46,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-09_02-04-46.log]
[testng] 02:04:46,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c4167d9 - End of configuration.
[testng] [2024-04-09 02:04:46,393] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] 02:04:46,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:04:46,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-09_02-04-46.log]
[testng] 02:04:46,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a912c99 - End of configuration.
[testng] [2024-04-09 02:04:46,425] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] 02:04:46,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:04:46,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-09_02-04-46.log]
[testng] 02:04:46,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13007168 - End of configuration.
[testng] [2024-04-09 02:04:46,457] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] 02:04:46,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:04:46,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-09_02-04-46.log]
[testng] 02:04:46,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2456e3da - End of configuration.
[testng] [2024-04-09 02:04:46,478] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] 02:04:46,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:04:46,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-09_02-04-46.log]
[testng] 02:04:46,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79426596 - End of configuration.
[testng] [2024-04-09 02:04:46,495] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] 02:04:46,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:04:46,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-09_02-04-46.log]
[testng] 02:04:46,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@246e4a0a - End of configuration.
[testng] [2024-04-09 02:04:46,545] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] 02:04:46,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:04:46,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-09_02-04-46.log]
[testng] 02:04:46,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad472fa - End of configuration.
[testng] [2024-04-09 02:04:46,567] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] 02:04:46,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:04:46,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-09_02-04-46.log]
[testng] 02:04:46,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174632d0 - End of configuration.
[testng] [2024-04-09 02:04:46,577] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] 02:04:46,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:04:46,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-09_02-04-46.log]
[testng] 02:04:46,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b6e138 - End of configuration.
[testng] [2024-04-09 02:04:46,594] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] 02:04:46,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:04:46,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-09_02-04-46.log]
[testng] 02:04:46,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@219e67ce - End of configuration.
[testng] [2024-04-09 02:04:46,620] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] 02:04:46,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:04:46,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:46,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-09_02-04-46.log]
[testng] 02:04:46,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@854b0d3 - End of configuration.
[testng] [2024-04-09 02:04:48,355] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-04-09 02:04:48,371] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-04-09 02:04:48,423] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-04-09 02:04:48,465] [pool-1-thread-8] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-04-09 02:04:48,504] [pool-1-thread-9] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-04-09 02:04:48,579] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-04-09 02:04:48,622] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-04-09 02:04:48,632] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-04-09 02:04:48,666] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] [2024-04-09 02:04:48,677] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-04-09 02:04:48,702] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-04-09 02:04:49,039] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-04-09 02:04:49,106] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] [2024-04-09 02:04:49,208] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-04-09 02:04:49,354] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-04-09 02:04:49,368] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-04-09 02:04:49,450] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-04-09 02:04:49,459] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-04-09 02:04:49,490] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-04-09 02:04:49,566] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-04-09 02:04:49,577] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-04-09 02:04:49,602] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-04-09 02:04:49,668] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-04-09 02:04:49,731] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-04-09 02:04:49,758] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-04-09 02:04:49,820] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-04-09 02:04:49,852] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-04-09 02:04:49,930] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-04-09 02:04:50,038] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-04-09 02:04:50,069] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-04-09 02:04:50,189] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-04-09 02:04:50,203] [pool-1-thread-2] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-04-09 02:04:50,222] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-04-09 02:04:50,254] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-04-09 02:04:50,336] [pool-1-thread-10] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-04-09 02:04:50,364] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-04-09 02:04:50,457] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-04-09 02:04:50,463] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-04-09 02:04:50,493] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-04-09 02:04:50,537] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-04-09 02:04:50,565] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-04-09 02:04:50,651] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-04-09 02:04:50,657] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-04-09 02:04:50,680] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-04-09 02:04:50,718] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-04-09 02:04:50,773] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-04-09 02:04:50,817] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-04-09 02:04:50,828] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-04-09 02:04:50,936] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] [2024-04-09 02:04:50,962] [pool-1-thread-4] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-04-09 02:04:51,006] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-04-09 02:04:51,047] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-04-09 02:04:51,143] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] [2024-04-09 02:04:51,187] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-04-09 02:04:51,345] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-04-09 02:04:51,365] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-04-09 02:04:51,381] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-04-09 02:04:51,421] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-04-09 02:04:51,480] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] [2024-04-09 02:04:51,492] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-04-09 02:04:51,703] [pool-1-thread-7] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-04-09 02:04:51,720] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-04-09 02:04:51,769] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] [2024-04-09 02:04:51,794] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-04-09 02:04:51,804] [pool-1-thread-8] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-04-09 02:04:51,820] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-04-09 02:04:51,828] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] [2024-04-09 02:04:51,848] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-04-09 02:04:52,003] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-04-09 02:04:52,049] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-04-09 02:04:52,083] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-04-09 02:04:52,104] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-04-09 02:04:52,108] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-04-09 02:04:52,181] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-04-09 02:04:52,264] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-04-09 02:04:52,287] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-04-09 02:04:52,328] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-04-09 02:04:52,386] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-04-09 02:04:52,416] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-04-09 02:04:52,448] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-04-09 02:04:52,472] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-04-09 02:04:52,517] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-04-09 02:04:52,543] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-04-09 02:04:52,559] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-04-09 02:04:52,601] [pool-1-thread-8] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-04-09 02:04:52,620] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-04-09 02:04:52,639] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-04-09 02:04:52,730] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-04-09 02:04:52,755] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-04-09 02:04:52,783] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-04-09 02:04:52,853] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-04-09 02:04:52,951] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-04-09 02:04:52,959] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] [2024-04-09 02:04:53,056] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] [2024-04-09 02:04:53,080] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-04-09 02:04:53,118] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-04-09 02:04:53,217] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-04-09 02:04:53,247] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-04-09 02:04:53,255] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-04-09 02:04:53,261] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-04-09 02:04:53,357] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-04-09 02:04:53,383] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-04-09 02:04:53,405] [pool-1-thread-9] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-04-09 02:04:53,467] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-04-09 02:04:53,534] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-04-09 02:04:53,581] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-04-09 02:04:53,636] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-04-09 02:04:53,697] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-04-09 02:04:53,846] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-04-09 02:04:53,890] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-04-09 02:04:53,909] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-04-09 02:04:53,914] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-04-09 02:04:53,941] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-04-09 02:04:54,009] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] [2024-04-09 02:04:54,033] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-04-09 02:04:54,076] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-04-09 02:04:54,142] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-04-09 02:04:54,219] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-04-09 02:04:54,279] [pool-1-thread-5] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-04-09 02:04:54,345] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-04-09 02:04:54,387] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-04-09 02:04:54,437] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-04-09 02:04:54,530] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-04-09 02:04:54,581] [pool-1-thread-6] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-04-09 02:04:54,607] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-04-09 02:04:54,675] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-04-09 02:04:54,867] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-04-09 02:04:54,929] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-04-09 02:04:54,981] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-04-09 02:04:55,056] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] [2024-04-09 02:04:55,086] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-04-09 02:04:55,121] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s:
[testng] [2024-04-09 02:04:55,222] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-04-09 02:04:55,280] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-04-09 02:04:55,365] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] [2024-04-09 02:04:55,513] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] [2024-04-09 02:04:55,555] [pool-1-thread-4] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-04-09 02:04:55,609] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-04-09 02:04:55,650] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-04-09 02:04:55,711] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-04-09 02:04:55,765] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-04-09 02:04:55,816] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-04-09 02:04:55,847] [pool-1-thread-11] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-04-09 02:04:55,877] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-04-09 02:04:55,888] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-04-09 02:04:55,991] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-04-09 02:04:56,039] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-04-09 02:04:56,107] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS