Started by upstream project "BIOFORMATS-test-repo" build number 234
originally caused by:
Started by upstream project "Trigger" build number 259
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins13022848103517234191.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36717_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:28:59,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:28:59,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 01:28:59,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:59,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:59,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:28:59,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:28:59,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:28:59,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:59,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:59,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:28:59,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:28:59,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:28:59,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:28:59,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:28:59,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:28:59,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:28:59,696 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:28:59,696 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:28:59,697 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:28:59,697 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:28:59,697 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 01:28:59,698 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 01:28:59,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-25 01:28:59,709] [main] java.version = 1.8.0_342
[testng] 01:28:59,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:28:59,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:59,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-28-59.log]
[testng] 01:28:59,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-25 01:28:59,762] [main] testng.directory = /data
[testng] [2024-10-25 01:28:59,762] [main] testng.configDirectory = /config
[testng] [2024-10-25 01:28:59,775] [main] testng.multiplier = 1.0
[testng] [2024-10-25 01:28:59,775] [main] testng.in-memory = false
[testng] [2024-10-25 01:28:59,775] [main] testng.allow-missing = false
[testng] [2024-10-25 01:28:59,775] [main] user.language = en
[testng] [2024-10-25 01:28:59,775] [main] user.country = ${user.country}
[testng] [2024-10-25 01:28:59,775] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-25 01:29:01,140] [main] ----------------------------------------
[testng] [2024-10-25 01:29:01,140] [main] Total files: 31
[testng] [2024-10-25 01:29:01,140] [main] Scan time: 1.364 s (44 ms/file)
[testng] [2024-10-25 01:29:01,140] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-25 01:29:05,105] [pool-1-thread-1] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] 01:29:05,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:29:05,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:05,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-29-05.log]
[testng] 01:29:05,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72115b8c - End of configuration.
[testng] [2024-10-25 01:29:05,187] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] 01:29:05,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:29:05,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:05,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-29-05.log]
[testng] 01:29:05,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c847a0e - End of configuration.
[testng] [2024-10-25 01:29:06,040] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng] 01:29:06,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:29:06,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-29-06.log]
[testng] 01:29:06,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@491d2225 - End of configuration.
[testng] [2024-10-25 01:29:06,114] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp:
[testng] 01:29:06,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:29:06,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-29-06.log]
[testng] 01:29:06,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cad303 - End of configuration.
[testng] [2024-10-25 01:29:06,174] [pool-1-thread-9] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] 01:29:06,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:29:06,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-29-06.log]
[testng] 01:29:06,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7d338 - End of configuration.
[testng] [2024-10-25 01:29:06,229] [pool-1-thread-8] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] 01:29:06,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:29:06,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-29-06.log]
[testng] 01:29:06,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a25918 - End of configuration.
[testng] [2024-10-25 01:29:06,291] [pool-1-thread-7] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng] 01:29:06,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:29:06,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-29-06.log]
[testng] 01:29:06,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0631d - End of configuration.
[testng] [2024-10-25 01:29:06,354] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp:
[testng] 01:29:06,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:06,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-29-06.log]
[testng] 01:29:06,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6528f1b5 - End of configuration.
[testng] [2024-10-25 01:29:06,425] [pool-1-thread-5] Initializing /data/curtis/image2.bmp:
[testng] 01:29:06,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:06,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-29-06.log]
[testng] 01:29:06,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cdc295f - End of configuration.
[testng] [2024-10-25 01:29:06,490] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] 01:29:06,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:06,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-29-06.log]
[testng] 01:29:06,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e70052 - End of configuration.
[testng] [2024-10-25 01:29:06,560] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] 01:29:06,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:06,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-29-06.log]
[testng] 01:29:06,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e02684 - End of configuration.
[testng] [2024-10-25 01:29:06,633] [pool-1-thread-2] Initializing /data/curtis/image4.bmp:
[testng] 01:29:06,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:06,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:06,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-29-06.log]
[testng] 01:29:06,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57a0f1da - End of configuration.
[testng] [2024-10-25 01:29:09,092] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] [2024-10-25 01:29:09,150] [pool-1-thread-11] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng] [2024-10-25 01:29:09,215] [pool-1-thread-5] Initializing /data/curtis/image5.bmp:
[testng] [2024-10-25 01:29:09,279] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] [2024-10-25 01:29:09,340] [pool-1-thread-3] Initializing /data/curtis/image1.bmp:
[testng] [2024-10-25 01:29:09,397] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] [2024-10-25 01:29:09,450] [pool-1-thread-10] Initializing /data/big-images/6kx6k.bmp:
[testng] [2024-10-25 01:29:09,513] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2024-10-25 01:29:09,705] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] [2024-10-25 01:29:11,319] [pool-1-thread-5] Initializing /data/brian/images/23srp5dksub.bmp:
[testng] [2024-10-25 01:29:11,825] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] [2024-10-25 01:29:11,886] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] [2024-10-25 01:29:11,946] [pool-1-thread-7] Initializing /data/brian/images/raw_a.bmp:
[testng] [2024-10-25 01:29:11,999] [pool-1-thread-6] Initializing /data/ticket-12971/foo.bmp:
[testng] [2024-10-25 01:29:12,061] [pool-1-thread-2] Initializing /data/curtis/image3.bmp:
[testng] [2024-10-25 01:29:12,120] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] [2024-10-25 01:29:12,633] [pool-1-thread-11] Initializing /data/big-images/8kx8k.bmp:
[testng] [2024-10-25 01:29:13,212] [pool-1-thread-12] Initializing /data/frank/cell_mask_error.bmp:
[testng] [2024-10-25 01:29:13,448] [pool-1-thread-6] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 33 seconds
Finished: SUCCESS