Started by upstream project "BIOFORMATS-test-repo" build number 234
originally caused by:
Started by upstream project "Trigger" build number 259
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14144801336418107161.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36719_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:35:16,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:35:16,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:35:16,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:35:16,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:35:16,983 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:35:16,984 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:35:16,984 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:35:16,984 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:35:16,984 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
[testng] 01:35:16,985 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
[testng] 01:35:16,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 476 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-25 01:35:16,997] [main] java.version = 1.8.0_342
[testng] 01:35:17,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:35:17,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:17,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-35-17.log]
[testng] 01:35:17,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-25 01:35:17,128] [main] testng.directory = /data
[testng] [2024-10-25 01:35:17,128] [main] testng.configDirectory = /config
[testng] [2024-10-25 01:35:17,142] [main] testng.multiplier = 1.0
[testng] [2024-10-25 01:35:17,143] [main] testng.in-memory = false
[testng] [2024-10-25 01:35:17,143] [main] testng.allow-missing = false
[testng] [2024-10-25 01:35:17,143] [main] user.language = en
[testng] [2024-10-25 01:35:17,143] [main] user.country = ${user.country}
[testng] [2024-10-25 01:35:17,143] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-25 01:37:16,323] [main] ----------------------------------------
[testng] [2024-10-25 01:37:16,323] [main] Total files: 226
[testng] [2024-10-25 01:37:16,323] [main] Scan time: 119.18 s (527 ms/file)
[testng] [2024-10-25 01:37:16,323] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-25 01:38:49,448] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 01:38:49,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:38:49,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:49,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-38-49.log]
[testng] 01:38:49,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650b08a8 - End of configuration.
[testng] [2024-10-25 01:38:49,487] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 01:38:49,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:38:49,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:49,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-38-49.log]
[testng] 01:38:49,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e16526 - End of configuration.
[testng] [2024-10-25 01:38:49,808] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif:
[testng] 01:38:49,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:38:49,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:49,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-38-49.log]
[testng] 01:38:49,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f1d473f - End of configuration.
[testng] [2024-10-25 01:38:50,127] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 01:38:50,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:38:50,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-38-50.log]
[testng] 01:38:50,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b63b2df - End of configuration.
[testng] [2024-10-25 01:38:50,207] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 01:38:50,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:38:50,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-38-50.log]
[testng] 01:38:50,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a08ac9 - End of configuration.
[testng] [2024-10-25 01:38:50,429] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 01:38:50,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:38:50,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-38-50.log]
[testng] 01:38:50,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf12664 - End of configuration.
[testng] [2024-10-25 01:38:50,719] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL:
[testng] 01:38:50,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:38:50,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-38-50.log]
[testng] 01:38:50,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a98931a - End of configuration.
[testng] [2024-10-25 01:38:50,747] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 01:38:50,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:38:50,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-38-50.log]
[testng] 01:38:50,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65aa0 - End of configuration.
[testng] [2024-10-25 01:38:50,846] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 01:38:50,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:38:50,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-38-50.log]
[testng] 01:38:50,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb8bd56 - End of configuration.
[testng] [2024-10-25 01:38:50,869] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 01:38:50,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:38:50,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-38-50.log]
[testng] 01:38:50,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e1b965 - End of configuration.
[testng] [2024-10-25 01:38:50,890] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 01:38:50,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:38:50,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:50,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-38-50.log]
[testng] 01:38:50,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@769cf8f - End of configuration.
[testng] [2024-10-25 01:38:51,071] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:38:51,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:38:51,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:51,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-38-51.log]
[testng] 01:38:51,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f829b6 - End of configuration.
[testng] [2024-10-25 01:38:53,164] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-10-25 01:38:53,500] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-10-25 01:38:53,573] [pool-1-thread-1] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-10-25 01:38:53,626] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-10-25 01:38:53,839] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-10-25 01:38:54,525] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-10-25 01:38:54,730] [pool-1-thread-3] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-10-25 01:38:54,995] [pool-1-thread-11] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-10-25 01:38:55,062] [pool-1-thread-6] Initializing /data/iplab/Actin.IPL:
[testng] [2024-10-25 01:38:55,129] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-10-25 01:38:55,394] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-10-25 01:38:55,845] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-10-25 01:38:56,258] [pool-1-thread-1] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-10-25 01:38:56,357] [pool-1-thread-3] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-10-25 01:38:56,636] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-10-25 01:38:56,682] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 51 seconds
Finished: SUCCESS