Started by upstream project "BIOFORMATS-test-repo" build number 234
originally caused by:
Started by upstream project "Trigger" build number 259
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15178150702522727104.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36730_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:40:54,384 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:40:54,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 01:40:54,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:40:54,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:40:54,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:40:54,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:40:54,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:40:54,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:40:54,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:40:54,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:40:54,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:40:54,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:40:54,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:40:54,675 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:40:54,675 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:40:54,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:40:54,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 01:40:54,677 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 01:40:54,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-25 01:40:54,687] [main] java.version = 1.8.0_342
[testng] 01:40:54,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:40:54,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:54,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-40-54.log]
[testng] 01:40:54,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-25 01:40:54,743] [main] testng.directory = /data
[testng] [2024-10-25 01:40:54,744] [main] testng.configDirectory = /config
[testng] [2024-10-25 01:40:54,757] [main] testng.multiplier = 1.0
[testng] [2024-10-25 01:40:54,757] [main] testng.in-memory = false
[testng] [2024-10-25 01:40:54,757] [main] testng.allow-missing = false
[testng] [2024-10-25 01:40:54,757] [main] user.language = en
[testng] [2024-10-25 01:40:54,757] [main] user.country = ${user.country}
[testng] [2024-10-25 01:40:54,758] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-25 01:40:55,438] [main] ----------------------------------------
[testng] [2024-10-25 01:40:55,439] [main] Total files: 21
[testng] [2024-10-25 01:40:55,439] [main] Scan time: 0.68 s (32 ms/file)
[testng] [2024-10-25 01:40:55,439] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-25 01:40:57,756] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA:
[testng] 01:40:57,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:40:57,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:57,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-40-57.log]
[testng] 01:40:57,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ccbc40 - End of configuration.
[testng] [2024-10-25 01:40:57,926] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA:
[testng] 01:40:57,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:40:57,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:57,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-40-57.log]
[testng] 01:40:57,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4221a259 - End of configuration.
[testng] [2024-10-25 01:40:58,009] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] 01:40:58,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:40:58,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-40-58.log]
[testng] 01:40:58,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c891af9 - End of configuration.
[testng] [2024-10-25 01:40:58,184] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] 01:40:58,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:40:58,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-40-58.log]
[testng] 01:40:58,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@762b378b - End of configuration.
[testng] [2024-10-25 01:40:58,364] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:40:58,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:40:58,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-40-58.log]
[testng] 01:40:58,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1961b558 - End of configuration.
[testng] [2024-10-25 01:40:58,453] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:40:58,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:40:58,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-40-58.log]
[testng] 01:40:58,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46320e52 - End of configuration.
[testng] [2024-10-25 01:40:58,483] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA:
[testng] 01:40:58,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:40:58,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-40-58.log]
[testng] 01:40:58,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58eef4dd - End of configuration.
[testng] [2024-10-25 01:40:58,655] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA:
[testng] 01:40:58,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:40:58,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-40-58.log]
[testng] 01:40:58,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559f3520 - End of configuration.
[testng] [2024-10-25 01:40:58,828] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA:
[testng] 01:40:58,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:40:58,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:58,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-40-58.log]
[testng] 01:40:58,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5da5e7 - End of configuration.
[testng] [2024-10-25 01:40:59,015] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA:
[testng] 01:40:59,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:40:59,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:59,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-40-59.log]
[testng] 01:40:59,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2c7139 - End of configuration.
[testng] [2024-10-25 01:40:59,142] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:40:59,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:40:59,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:59,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-40-59.log]
[testng] 01:40:59,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560badc - End of configuration.
[testng] [2024-10-25 01:40:59,213] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA:
[testng] 01:40:59,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:40:59,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:40:59,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-40-59.log]
[testng] 01:40:59,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353f44fd - End of configuration.
[testng] [2024-10-25 01:41:02,147] [pool-1-thread-4] Initializing /data/samples/CTC24.TGA:
[testng] [2024-10-25 01:41:02,285] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-10-25 01:41:02,365] [pool-1-thread-7] Initializing /data/samples/CBW8.TGA:
[testng] [2024-10-25 01:41:02,443] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-10-25 01:41:02,581] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA:
[testng] [2024-10-25 01:41:02,699] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA:
[testng] [2024-10-25 01:41:02,791] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA:
[testng] [2024-10-25 01:41:03,008] [pool-1-thread-6] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-10-25 01:41:03,095] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS