Started by upstream project "BIOFORMATS-test-repo" build number 234
originally caused by:
 Started by upstream project "Trigger" build number 259
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9908304657671176106.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36752_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:04:01,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:04:01,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 02:04:01,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:04:01,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:04:01,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:04:01,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:04:01,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:04:01,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:04:01,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:04:01,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:04:01,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:04:01,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:04:01,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:04:01,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:04:01,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:04:01,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:04:01,988 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:04:01,989 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:04:01,989 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:04:01,989 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:04:01,989 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 02:04:01,990 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 02:04:01,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 367 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-25 02:04:02,004] [main] java.version = 1.8.0_342
   [testng] 02:04:02,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:04:02,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:02,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_02-04-02.log]
   [testng] 02:04:02,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-10-25 02:04:02,077] [main] testng.directory = /data
   [testng] [2024-10-25 02:04:02,077] [main] testng.configDirectory = /config
   [testng] [2024-10-25 02:04:02,094] [main] testng.multiplier = 1.0
   [testng] [2024-10-25 02:04:02,094] [main] testng.in-memory = false
   [testng] [2024-10-25 02:04:02,094] [main] testng.allow-missing = false
   [testng] [2024-10-25 02:04:02,095] [main] user.language = en
   [testng] [2024-10-25 02:04:02,095] [main] user.country = ${user.country}
   [testng] [2024-10-25 02:04:02,095] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-10-25 02:04:07,066] [main] ----------------------------------------
   [testng] [2024-10-25 02:04:07,066] [main] Total files: 20
   [testng] [2024-10-25 02:04:07,066] [main] Scan time: 4.971 s (248 ms/file)
   [testng] [2024-10-25 02:04:07,066] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-25 02:04:11,630] [pool-1-thread-1] Initializing /data/ascb/514_9903.mrc: 
   [testng] 02:04:11,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:04:11,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:11,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_02-04-11.log]
   [testng] 02:04:11,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c046853 - End of configuration.
   [testng] [2024-10-25 02:04:11,857] [pool-1-thread-12] Initializing /data/samples/golgi.mrc: 
   [testng] 02:04:11,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:04:11,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:11,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_02-04-11.log]
   [testng] 02:04:11,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10114018 - End of configuration.
   [testng] [2024-10-25 02:04:12,128] [pool-1-thread-11] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] 02:04:12,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:04:12,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:12,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_02-04-12.log]
   [testng] 02:04:12,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b03250 - End of configuration.
   [testng] [2024-10-25 02:04:12,267] [pool-1-thread-10] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 02:04:12,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:04:12,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:12,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_02-04-12.log]
   [testng] 02:04:12,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4490a8b5 - End of configuration.
   [testng] [2024-10-25 02:04:12,430] [pool-1-thread-9] Initializing /data/samples/1160.mrc: 
   [testng] 02:04:12,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:04:12,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:12,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_02-04-12.log]
   [testng] 02:04:12,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9673fea - End of configuration.
   [testng] [2024-10-25 02:04:12,582] [pool-1-thread-8] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] 02:04:12,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:04:12,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:12,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_02-04-12.log]
   [testng] 02:04:12,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23e78f8 - End of configuration.
   [testng] [2024-10-25 02:04:12,740] [pool-1-thread-7] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 02:04:12,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:04:12,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:12,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_02-04-12.log]
   [testng] 02:04:12,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3813a89 - End of configuration.
   [testng] [2024-10-25 02:04:12,974] [pool-1-thread-6] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 02:04:12,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:04:12,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:12,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_02-04-12.log]
   [testng] 02:04:12,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166ed973 - End of configuration.
   [testng] [2024-10-25 02:04:13,144] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 02:04:13,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:04:13,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:13,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_02-04-13.log]
   [testng] 02:04:13,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f43095 - End of configuration.
   [testng] [2024-10-25 02:04:13,296] [pool-1-thread-4] Initializing /data/ascb/cfa1071.mrc: 
   [testng] 02:04:13,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:04:13,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:13,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_02-04-13.log]
   [testng] 02:04:13,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e5194a6 - End of configuration.
   [testng] [2024-10-25 02:04:13,485] [pool-1-thread-3] Initializing /data/dan/one.mrc: 
   [testng] 02:04:13,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:04:13,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:13,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_02-04-13.log]
   [testng] 02:04:13,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@450312c5 - End of configuration.
   [testng] [2024-10-25 02:04:13,689] [pool-1-thread-2] Initializing /data/dan/two.mrc: 
   [testng] 02:04:13,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:04:13,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:13,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_02-04-13.log]
   [testng] 02:04:13,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a5f084 - End of configuration.
   [testng] [2024-10-25 02:04:18,241] [pool-1-thread-6] Initializing /data/dan/three.mrc: 
   [testng] [2024-10-25 02:04:18,485] [pool-1-thread-11] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] [2024-10-25 02:04:18,680] [pool-1-thread-7] Initializing /data/strand/Series1_A.mrc: 
   [testng] [2024-10-25 02:04:19,045] [pool-1-thread-5] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] [2024-10-25 02:04:19,230] [pool-1-thread-12] Initializing /data/jcb/thylakoid5.rec: 
   [testng] [2024-10-25 02:04:19,443] [pool-1-thread-10] Initializing /data/ascb/c191ali.mrc: 
   [testng] [2024-10-25 02:04:20,015] [pool-1-thread-8] Initializing /data/ascb/c191.st: 
   [testng] [2024-10-25 02:04:20,215] [pool-1-thread-3] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS