Started by upstream project "BIOFORMATS-test-repo" build number 234
originally caused by:
Started by upstream project "Trigger" build number 259
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5349788587117017050.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36759_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:29:30,238 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:29:30,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 02:29:30,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:29:30,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:29:30,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:29:30,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:29:30,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:29:30,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:29:30,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:29:30,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:29:30,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:29:30,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:29:30,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:29:30,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:29:30,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:29:30,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:29:30,500 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:29:30,500 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:29:30,500 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:29:30,501 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:29:30,501 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 02:29:30,502 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 02:29:30,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-25 02:29:30,512] [main] java.version = 1.8.0_342
[testng] 02:29:30,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:29:30,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:30,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_02-29-30.log]
[testng] 02:29:30,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-25 02:29:30,563] [main] testng.directory = /data
[testng] [2024-10-25 02:29:30,563] [main] testng.configDirectory = /config
[testng] [2024-10-25 02:29:30,575] [main] testng.multiplier = 1.0
[testng] [2024-10-25 02:29:30,575] [main] testng.in-memory = false
[testng] [2024-10-25 02:29:30,575] [main] testng.allow-missing = false
[testng] [2024-10-25 02:29:30,575] [main] user.language = en
[testng] [2024-10-25 02:29:30,575] [main] user.country = ${user.country}
[testng] [2024-10-25 02:29:30,575] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-25 02:29:35,817] [main] ----------------------------------------
[testng] [2024-10-25 02:29:35,818] [main] Total files: 25
[testng] [2024-10-25 02:29:35,818] [main] Scan time: 5.242 s (209 ms/file)
[testng] [2024-10-25 02:29:35,818] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-25 02:29:41,858] [pool-1-thread-1] Initializing /data/imagic/1-1.dm2:
[testng] 02:29:41,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:29:41,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:41,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_02-29-41.log]
[testng] 02:29:41,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d104d8 - End of configuration.
[testng] [2024-10-25 02:29:41,963] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 02:29:41,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:29:41,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:41,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_02-29-41.log]
[testng] 02:29:41,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb61b2c - End of configuration.
[testng] [2024-10-25 02:29:41,983] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 02:29:41,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:29:41,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:41,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_02-29-41.log]
[testng] 02:29:41,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6664e677 - End of configuration.
[testng] [2024-10-25 02:29:42,073] [pool-1-thread-10] Initializing /data/imagic/TEM 10118.dm2:
[testng] 02:29:42,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:29:42,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_02-29-42.log]
[testng] 02:29:42,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ae8824 - End of configuration.
[testng] [2024-10-25 02:29:42,176] [pool-1-thread-9] Initializing /data/pang/unproc-auto:
[testng] 02:29:42,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:29:42,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_02-29-42.log]
[testng] 02:29:42,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f497c8 - End of configuration.
[testng] [2024-10-25 02:29:42,274] [pool-1-thread-8] Initializing /data/pang/grating025k.dm2:
[testng] 02:29:42,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:29:42,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_02-29-42.log]
[testng] 02:29:42,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@302a3f22 - End of configuration.
[testng] [2024-10-25 02:29:42,356] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 02:29:42,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:29:42,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_02-29-42.log]
[testng] 02:29:42,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52937ae3 - End of configuration.
[testng] [2024-10-25 02:29:42,373] [pool-1-thread-6] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 02:29:42,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:29:42,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_02-29-42.log]
[testng] 02:29:42,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3d3adf - End of configuration.
[testng] [2024-10-25 02:29:42,464] [pool-1-thread-5] Initializing /data/pang/10500x-o4:
[testng] 02:29:42,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:29:42,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_02-29-42.log]
[testng] 02:29:42,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368fffa8 - End of configuration.
[testng] [2024-10-25 02:29:42,569] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 02:29:42,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:29:42,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_02-29-42.log]
[testng] 02:29:42,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26da4a5 - End of configuration.
[testng] [2024-10-25 02:29:42,587] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 02:29:42,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:29:42,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_02-29-42.log]
[testng] 02:29:42,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68c06a3a - End of configuration.
[testng] [2024-10-25 02:29:42,605] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 02:29:42,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:29:42,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:29:42,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_02-29-42.log]
[testng] 02:29:42,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c638eb2 - End of configuration.
[testng] [2024-10-25 02:29:44,518] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] [2024-10-25 02:29:44,603] [pool-1-thread-4] Initializing /data/pang/signed:
[testng] [2024-10-25 02:29:44,697] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] [2024-10-25 02:29:44,713] [pool-1-thread-11] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] [2024-10-25 02:29:44,792] [pool-1-thread-8] Initializing /data/imagic/13008.dm2:
[testng] [2024-10-25 02:29:44,875] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 20 seconds
Finished: SUCCESS