Started by upstream project "BIOFORMATS-test-repo" build number 234
originally caused by:
Started by upstream project "Trigger" build number 259
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14118473407901856256.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36825_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:06:03,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:06:03,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:06:03,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:06:03,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:06:03,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:06:03,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:06:03,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:06:03,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:06:04,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:06:04,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:06:04,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:06:04,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:06:04,190 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:06:04,190 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:06:04,190 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:06:04,191 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:06:04,191 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:06:04,192 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:06:04,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-25 04:06:04,202] [main] java.version = 1.8.0_342
[testng] 04:06:04,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:06:04,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:04,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_04-06-04.log]
[testng] 04:06:04,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-25 04:06:04,261] [main] testng.directory = /data
[testng] [2024-10-25 04:06:04,261] [main] testng.configDirectory = /config
[testng] [2024-10-25 04:06:04,273] [main] testng.multiplier = 1.0
[testng] [2024-10-25 04:06:04,273] [main] testng.in-memory = false
[testng] [2024-10-25 04:06:04,274] [main] testng.allow-missing = false
[testng] [2024-10-25 04:06:04,274] [main] user.language = en
[testng] [2024-10-25 04:06:04,274] [main] user.country = ${user.country}
[testng] [2024-10-25 04:06:04,274] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-25 04:06:05,535] [main] ----------------------------------------
[testng] [2024-10-25 04:06:05,535] [main] Total files: 18
[testng] [2024-10-25 04:06:05,536] [main] Scan time: 1.261 s (70 ms/file)
[testng] [2024-10-25 04:06:05,536] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-25 04:06:13,162] [pool-1-thread-1] Initializing /data/ascb/423.psd:
[testng] 04:06:13,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:06:13,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:13,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_04-06-13.log]
[testng] 04:06:13,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33fcbd39 - End of configuration.
[testng] [2024-10-25 04:06:13,509] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 04:06:13,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:06:13,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:13,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_04-06-13.log]
[testng] 04:06:13,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1e18a8 - End of configuration.
[testng] [2024-10-25 04:06:13,920] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 04:06:13,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:06:13,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:13,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_04-06-13.log]
[testng] 04:06:13,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21305b4e - End of configuration.
[testng] [2024-10-25 04:06:14,325] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd:
[testng] 04:06:14,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:06:14,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:14,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_04-06-14.log]
[testng] 04:06:14,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d155c87 - End of configuration.
[testng] [2024-10-25 04:06:14,655] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 04:06:14,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:06:14,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:14,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_04-06-14.log]
[testng] 04:06:14,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e10f29 - End of configuration.
[testng] [2024-10-25 04:06:14,966] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd:
[testng] 04:06:14,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:06:14,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:14,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_04-06-14.log]
[testng] 04:06:14,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8f0603 - End of configuration.
[testng] [2024-10-25 04:06:15,316] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 04:06:15,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:06:15,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:15,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_04-06-15.log]
[testng] 04:06:15,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6283fd2c - End of configuration.
[testng] [2024-10-25 04:06:15,650] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd:
[testng] 04:06:15,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:06:15,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:15,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_04-06-15.log]
[testng] 04:06:15,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a29a7b7 - End of configuration.
[testng] [2024-10-25 04:06:16,049] [pool-1-thread-5] Initializing /data/misc/smilie.psd:
[testng] 04:06:16,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:06:16,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:16,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_04-06-16.log]
[testng] 04:06:16,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@577fc55a - End of configuration.
[testng] [2024-10-25 04:06:16,371] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 04:06:16,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:06:16,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:16,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_04-06-16.log]
[testng] 04:06:16,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58fc4a38 - End of configuration.
[testng] [2024-10-25 04:06:16,703] [pool-1-thread-3] Initializing /data/ascb/607x.psd:
[testng] 04:06:16,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:06:16,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:16,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_04-06-16.log]
[testng] 04:06:16,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1caccdda - End of configuration.
[testng] [2024-10-25 04:06:17,636] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 04:06:17,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:06:17,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:17,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_04-06-17.log]
[testng] 04:06:17,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ca35b8 - End of configuration.
[testng] [2024-10-25 04:06:23,393] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] [2024-10-25 04:06:23,763] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd:
[testng] [2024-10-25 04:06:24,068] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd:
[testng] [2024-10-25 04:06:24,393] [pool-1-thread-5] Initializing /data/cris/house.tif:
[testng] [2024-10-25 04:06:25,478] [pool-1-thread-12] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] [2024-10-25 04:06:25,796] [pool-1-thread-11] Initializing /data/misc/vig_drawing_1.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 36 seconds
Finished: SUCCESS