Started by upstream project "BIOFORMATS-test-repo" build number 235
originally caused by:
 Started by upstream project "Trigger" build number 260
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10110318568778814044.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36857_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:20:18,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:20:18,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 01:20:18,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:18,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:18,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:20:18,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:20:18,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:20:18,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:18,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:18,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:20:18,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:20:18,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:20:18,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:20:18,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:20:18,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:20:18,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:20:18,917 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:20:18,917 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:20:18,917 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:20:18,918 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:20:18,918 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 01:20:18,918 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 01:20:18,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-26 01:20:18,927] [main] java.version = 11.0.16
   [testng] 01:20:18,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:20:18,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:18,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-26_01-20-18.log]
   [testng] 01:20:18,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-26 01:20:18,973] [main] testng.directory = /data
   [testng] [2024-10-26 01:20:18,973] [main] testng.configDirectory = /config
   [testng] [2024-10-26 01:20:18,982] [main] testng.multiplier = 1.0
   [testng] [2024-10-26 01:20:18,984] [main] testng.in-memory = false
   [testng] [2024-10-26 01:20:18,984] [main] testng.allow-missing = false
   [testng] [2024-10-26 01:20:18,984] [main] user.language = en
   [testng] [2024-10-26 01:20:18,984] [main] user.country = ${user.country}
   [testng] [2024-10-26 01:20:18,984] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-26 01:20:19,675] [main] ----------------------------------------
   [testng] [2024-10-26 01:20:19,676] [main] Total files: 36
   [testng] [2024-10-26 01:20:19,676] [main] Scan time: 0.691 s (19 ms/file)
   [testng] [2024-10-26 01:20:19,676] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 35 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-26 01:20:21,176] [pool-1-thread-1] Initializing /data/generated/mri-stack25.pcx: 
   [testng] 01:20:21,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:20:21,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-26_01-20-21.log]
   [testng] 01:20:21,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@587aaac5 - End of configuration.
   [testng] [2024-10-26 01:20:21,246] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: 
   [testng] 01:20:21,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:20:21,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-26_01-20-21.log]
   [testng] 01:20:21,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@272b7971 - End of configuration.
   [testng] [2024-10-26 01:20:21,259] [pool-1-thread-11] Initializing /data/generated/mri-stack19.pcx: 
   [testng] 01:20:21,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:20:21,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-26_01-20-21.log]
   [testng] 01:20:21,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee01919 - End of configuration.
   [testng] [2024-10-26 01:20:21,274] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: 
   [testng] 01:20:21,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:20:21,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-26_01-20-21.log]
   [testng] 01:20:21,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8e1d55 - End of configuration.
   [testng] [2024-10-26 01:20:21,287] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: 
   [testng] 01:20:21,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:20:21,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-26_01-20-21.log]
   [testng] 01:20:21,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f87aeb2 - End of configuration.
   [testng] [2024-10-26 01:20:21,300] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: 
   [testng] 01:20:21,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:20:21,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-26_01-20-21.log]
   [testng] 01:20:21,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e4152b3 - End of configuration.
   [testng] [2024-10-26 01:20:21,310] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: 
   [testng] 01:20:21,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:20:21,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-26_01-20-21.log]
   [testng] 01:20:21,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672a6ce3 - End of configuration.
   [testng] [2024-10-26 01:20:21,323] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: 
   [testng] 01:20:21,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:20:21,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-26_01-20-21.log]
   [testng] 01:20:21,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0e7e31 - End of configuration.
   [testng] [2024-10-26 01:20:21,332] [pool-1-thread-5] Initializing /data/generated/mri-stack17.pcx: 
   [testng] 01:20:21,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:20:21,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-26_01-20-21.log]
   [testng] 01:20:21,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aa824ce - End of configuration.
   [testng] [2024-10-26 01:20:21,342] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx: 
   [testng] 01:20:21,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:20:21,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-26_01-20-21.log]
   [testng] 01:20:21,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aec5e2d - End of configuration.
   [testng] [2024-10-26 01:20:21,356] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx: 
   [testng] 01:20:21,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:20:21,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-26_01-20-21.log]
   [testng] 01:20:21,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68c6274e - End of configuration.
   [testng] [2024-10-26 01:20:21,365] [pool-1-thread-2] Initializing /data/generated/mri-stack13.pcx: 
   [testng] 01:20:21,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:20:21,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:21,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-26_01-20-21.log]
   [testng] 01:20:21,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6add677e - End of configuration.
   [testng] [2024-10-26 01:20:24,213] [pool-1-thread-8] Initializing /data/generated/mri-stack21.pcx: 
   [testng] [2024-10-26 01:20:24,220] [pool-1-thread-9] Initializing /data/generated/mri-stack0.pcx: 
   [testng] [2024-10-26 01:20:24,227] [pool-1-thread-4] Initializing /data/generated/mri-stack1.pcx: 
   [testng] [2024-10-26 01:20:24,235] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: 
   [testng] [2024-10-26 01:20:24,248] [pool-1-thread-3] Initializing /data/generated/mri-stack22.pcx: 
   [testng] [2024-10-26 01:20:24,255] [pool-1-thread-1] Initializing /data/generated/mri-stack10.pcx: 
   [testng] [2024-10-26 01:20:24,263] [pool-1-thread-6] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: 
   [testng] [2024-10-26 01:20:24,273] [pool-1-thread-2] Initializing /data/josh/Screenshots/leica-lif.pcx: 
   [testng] [2024-10-26 01:20:24,283] [pool-1-thread-10] Initializing /data/generated/mri-stack15.pcx: 
   [testng] [2024-10-26 01:20:24,297] [pool-1-thread-7] Initializing /data/generated/mri-stack18.pcx: 
   [testng] [2024-10-26 01:20:24,306] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: 
   [testng] [2024-10-26 01:20:24,319] [pool-1-thread-5] Initializing /data/josh/Screenshots/nd2 color.pcx: 
   [testng] [2024-10-26 01:20:25,213] [pool-1-thread-9] Initializing /data/generated/mri-stack8.pcx: 
   [testng] [2024-10-26 01:20:25,362] [pool-1-thread-10] Initializing /data/generated/mri-stack14.pcx: 
   [testng] [2024-10-26 01:20:25,377] [pool-1-thread-1] Initializing /data/generated/mri-stack3.pcx: 
   [testng] [2024-10-26 01:20:25,388] [pool-1-thread-8] Initializing /data/generated/mri-stack12.pcx: 
   [testng] [2024-10-26 01:20:25,411] [pool-1-thread-3] Initializing /data/generated/mri-stack2.pcx: 
   [testng] [2024-10-26 01:20:25,422] [pool-1-thread-7] Initializing /data/generated/mri-stack24.pcx: 
   [testng] [2024-10-26 01:20:25,428] [pool-1-thread-4] Initializing /data/josh/Screenshots/epscolor.pcx: 
   [testng] [2024-10-26 01:20:25,648] [pool-1-thread-9] Initializing /data/josh/Screenshots/biorad color off.pcx: 
   [testng] [2024-10-26 01:20:25,981] [pool-1-thread-2] Initializing /data/generated/mri-stack4.pcx: 
   [testng] [2024-10-26 01:20:26,078] [pool-1-thread-5] Initializing /data/generated/mri-stack23.pcx: 
   [testng] [2024-10-26 01:20:26,180] [pool-1-thread-6] Initializing /data/josh/Screenshots/deltavision.pcx: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1855, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS